RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ZNF483Q8TF39 744 aaPredicted RBP10.48□□□□□ -0.73
CUX1-217ENST00000558836 CYB5D2Q8WUJ1 264 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 SKA2Q8WVK7 121 aaPredicted RBP10.48□□□□□ -0.73
CUX1-217ENST00000558836 ING5Q8WYH8 240 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ASB2Q96Q27 587 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 BBS2Q9BXC9 721 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 ELOVL2Q9NXB9 296 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 DTNAQ9Y4J8 743 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 NOTCH4Q99466 2003 aa10.48□□□□□ -0.73
CUX1-217ENST00000558836 A6NHS1 94 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 CYBBP04839 570 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 LYNP07948 512 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 VCLP18206 1134 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ITGALP20701 1170 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SERPINA4P29622 427 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 CCNHP51946 323 aaPredicted RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 MRPS35P82673 323 aaKnown RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 PTSQ03393 145 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 NRF1Q16656 503 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ATP13A5Q4VNC0 1218 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 CMPK2Q5EBM0 449 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 FAM217AQ8IXS0 508 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 OR4F6Q8NGB9 312 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 OR56A4Q8NGH8 313 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 LRTOMTQ8WZ04 291 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.47□□□□□ -0.732e-7■■■■■ 62.8
CUX1-217ENST00000558836 ASB9Q96DX5 294 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 C11orf49Q9H6J7 331 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.47□□□□□ -0.73
CUX1-217ENST00000558836 SUFUQ9UMX1 484 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 NUP214P35658 2090 aaPredicted RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 NME4O00746 187 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 PER2O15055 1255 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 LATS1O95835 1130 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ACRV1P26436 265 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 PPM1AP35813 382 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 GGT5P36269 586 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 GRIA3P42263 894 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 MYLK3Q32MK0 819 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 RABL3Q5HYI8 236 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 PAGE3Q5JUK9 113 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 C6orf10Q5SRN2 563 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 Q6ZSR9 355 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 GOLGA7Q7Z5G4 137 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 AMIGO2Q86SJ2 522 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ELMOD1Q8N336 334 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 STON2Q8WXE9 905 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 MTFMTQ96DP5 389 aaKnown RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 DCUN1D1Q96GG9 259 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ZSWIM3Q96MP5 696 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 YIPF3Q9GZM5 350 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 IPPKQ9H8X2 491 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SDR39U1Q9NRG7 319 aaPredicted RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 FARSBQ9NSD9 589 aaKnown RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 SCOCQ9UIL1 159 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 RIMS3Q9UJD0 308 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 USP22Q9UPT9 525 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 NDUFAF1Q9Y375 327 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 GPR45Q9Y5Y3 372 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SPEGQ15772 3267 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ZNF839A8K0R7 811 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 OR7A17O14581 309 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 STX16O14662 325 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 KLK8O60259 260 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SYNCRIPO60506 623 aaKnown RBP10.47□□□□□ -0.73
CUX1-217ENST00000558836 TPST1O60507 370 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ADH1AP07327 375 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 UROSP10746 265 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 FOLH1Q04609 750 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ABRAXAS2Q15018 415 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 TIGD2Q4W5G0 525 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 RBFAQ8N0V3 343 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 STK40Q8N2I9 435 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ICA1LQ8NDH6 482 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SCAMP4Q969E2 229 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 TMEM74Q96NL1 305 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SUV39H2Q9H5I1 410 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 TMEM181Q9P2C4 612 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 ZNHIT2Q9UHR6 403 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 SNX13Q9Y5W8 968 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 WNT6Q9Y6F9 365 aa10.47□□□□□ -0.73
CUX1-217ENST00000558836 DENND4CQ5VZ89 1909 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.46□□□□□ -0.73
CUX1-217ENST00000558836 TAPBPO15533 448 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 MLYCDO95822 493 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 CHEK2O96017 543 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 GLUD1P00367 558 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 IL12AP29459 219 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 IRS1P35568 1242 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 ACADVLP49748 655 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 HSPA14Q0VDF9 509 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 MED21Q13503 144 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 GTF2H2Q13888 395 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 MAP7D1Q3KQU3 841 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 C6orf136Q5SQH8 315 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 ZNF648Q5T619 568 aaPredicted RBP10.46□□□□□ -0.73
CUX1-217ENST00000558836 OGFRL1Q5TC84 451 aaPredicted RBP10.46□□□□□ -0.73
CUX1-217ENST00000558836 C1orf53Q5VUE5 145 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 GTF2H2CQ6P1K8 395 aa10.46□□□□□ -0.73
CUX1-217ENST00000558836 C22orf39Q6P5X5 142 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms