RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PROS1P07225 676 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 HSD3B2P26439 372 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 MLF1P58340 268 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 RPL11P62913 178 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 PLIN5Q00G26 463 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 MALLQ13021 153 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 MTX1Q13505 466 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 LRP8Q14114 963 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 KIR2DS5Q14953 304 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 LARS2Q15031 903 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 SLC14A2Q15849 920 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 BTN2A1Q7KYR7 527 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SLC22A16Q86VW1 577 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 NKAPQ8N5F7 415 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 C12orf76Q8N812 135 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 NAXEQ8NCW5 288 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 OR9A4Q8NGU2 314 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TRMT10AQ8TBZ6 339 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 ZNF507Q8TCN5 953 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ZFPM2Q8WW38 1151 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PBKQ96KB5 322 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ZNF578Q96N58 590 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 ANKRD27Q96NW4 1050 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 MED18Q9BUE0 208 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DPH3P1Q9H4G8 78 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ARNT2Q9HBZ2 717 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ITM2CQ9NQX7 267 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PDLIM7Q9NR12 457 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 KLC4Q9NSK0 619 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SEMA4GQ9NTN9 838 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DDX18Q9NVP1 670 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 IL36AQ9UHA7 158 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DLGAP4Q9Y2H0 992 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 KLF13Q9Y2Y9 288 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 TMEM184BQ9Y519 407 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 COL3A1P02461 1466 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 DCDC2BA2VCK2 349 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ANKRD61A6NGH8 418 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SPATA31C2B4DYI2 1134 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PSTPIP1O43586 416 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ECI2O75521 394 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TNFSF15O95150 251 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ANGPTL1O95841 491 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SERPING1P05155 500 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 CYP1A2P05177 515 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 CST5P28325 142 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 RPL4P36578 427 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 MAGEA2P43356 314 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 MAN2A2P49641 1150 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DMTNQ08495 405 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ST3GAL1Q11201 340 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SLC1A5Q15758 541 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 QPCTQ16769 361 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SGO1Q5FBB7 561 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ANKRD26P1Q6NSI1 321 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 APOBEC3HQ6NTF7 200 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 GPAT2Q6NUI2 795 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TMEM154Q6P9G4 183 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 POTEHQ6S545 545 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ERN2Q76MJ5 926 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 RNF44Q7L0R7 432 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 GDF7Q7Z4P5 450 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 FBXL14Q8N1E6 418 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 LPPQ93052 612 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 WNT8BQ93098 351 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PPP1R14BQ96C90 147 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 RSRC1Q96IZ7 334 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 MS4A14Q96JA4 679 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 AGAP3Q96P47 875 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ACO2Q99798 780 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 PLEKHA1Q9HB21 404 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ASB6Q9NWX5 421 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ADGRE2Q9UHX3 823 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 GGA2Q9UJY4 613 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 VANGL2Q9ULK5 521 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TLR6Q9Y2C9 796 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PCDHGA1Q9Y5H4 931 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ENTPD2Q9Y5L3 495 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 GALR2O43603 387 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 NRP2O60462 931 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DIAPH2O60879 1101 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ZNF202O95125 648 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 LGI1O95970 557 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 AGR2O95994 175 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ACPPP15309 386 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TSHRP16473 764 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 LPOP22079 712 aaPredicted RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 CD27P26842 260 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 IL3RAP26951 378 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 FXR2P51116 673 aaKnown RBP eCLIP4.06□□□□□ -1.76
USH2A-202ENST00000366942 HSPA14Q0VDF9 509 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 GPR17Q13304 367 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ILKQ13418 452 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DLG2Q15700 870 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DECR1Q16698 335 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 FRMPD2BQ6IN97 320 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 HMBOX1Q6NT76 420 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TLDC1Q6P9B6 456 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 DNAAF5Q86Y56 855 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 EXD3Q8N9H8 876 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms