RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NPIPB15A6NHN6 443 aaPredicted RBP3.77□□□□□ -1.81
CD44-239ENST00000639002 ANKRD66B4E2M5 251 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 ATP2A1O14983 1001 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 UBL4AP11441 157 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 MAP2K2P36507 400 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 MAPK9P45984 424 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 FRG1Q14331 258 aaKnown RBP3.77□□□□□ -1.81
CD44-239ENST00000639002 LRIF1Q5T3J3 769 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 SDCCAG8Q86SQ7 713 aaPredicted RBP3.77□□□□□ -1.81
CD44-239ENST00000639002 ESX1Q8N693 406 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 PERPQ96FX8 193 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 ART5Q96L15 291 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 CDK19Q9BWU1 502 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 MTMR10Q9NXD2 777 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 PYGO1Q9Y3Y4 419 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 LRRFIP2Q9Y608 721 aaKnown RBP3.77□□□□□ -1.81
CD44-239ENST00000639002 SMAD5-AS1Q9Y6J3 95 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 RNF215Q9Y6U7 377 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 MAU2Q9Y6X3 613 aa3.77□□□□□ -1.81
CD44-239ENST00000639002 A0A0G2JLW4 131 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 TEX13DA0A0J9YY54 714 aaPredicted RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 EIF4E1BA6NMX2 242 aaKnown RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 EIF3CLB5ME19 914 aaKnown RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 H0YIN7 160 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 PSMD14O00487 310 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 CAVIN2O95810 425 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 IGHV4-38-2P0DP08 117 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 CEACAM1P13688 526 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 SELLP14151 372 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 HOXC13P31276 330 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 BIRC3Q13489 604 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 ITGA9Q13797 1035 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 PNLIPRP3Q17RR3 467 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 KIAA1644Q3SXP7 199 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 SOWAHCQ53LP3 525 aaPredicted RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 MFSD6Q6ZSS7 791 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 LONP2Q86WA8 852 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 PM20D2Q8IYS1 436 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 HCAR2Q8TDS4 363 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 INTS12Q96CB8 462 aaKnown RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 ZNF653Q96CK0 615 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 RRP36Q96EU6 259 aaKnown RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 MAP7D2Q96T17 732 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 GFI1Q99684 422 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 SIL1Q9H173 461 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 RANBP17Q9H2T7 1088 aaKnown RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 ERVMER34-1Q9H9K5 563 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 RANGRFQ9HD47 186 aaPredicted RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 DLGAP2Q9P1A6 1054 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 CACNG5Q9UF02 275 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 SLC13A4Q9UKG4 626 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 ARHGAP26Q9UNA1 814 aa3.76□□□□□ -1.81
CD44-239ENST00000639002 TMEM184BQ9Y519 407 aaPredicted RBP3.76□□□□□ -1.81
CD44-239ENST00000639002 A6NL46 340 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PLPP2O43688 288 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 NADKO95544 446 aaPredicted RBP3.75□□□□□ -1.81
CD44-239ENST00000639002 LIPFP07098 398 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 NR2F2P24468 414 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 RGS2P41220 211 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 LMO4P61968 165 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 OLR1P78380 273 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PDE1CQ14123 709 aaPredicted RBP3.75□□□□□ -1.81
CD44-239ENST00000639002 ZFP69Q49AA0 526 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 ACAD10Q6JQN1 1059 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PACS1Q6VY07 963 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 GSTA5Q7RTV2 222 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 ARMC8Q8IUR7 673 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 EMC1Q8N766 993 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 RDM1Q8NG50 284 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PRMT6Q96LA8 375 aaPredicted RBP3.75□□□□□ -1.81
CD44-239ENST00000639002 SEMA3CQ99985 751 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PYGO2Q9BRQ0 406 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 RAD21L1Q9H4I0 556 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PDZD7Q9H5P4 517 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PELI2Q9HAT8 420 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 APOBEC3GQ9HC16 384 aaKnown RBP3.75□□□□□ -1.81
CD44-239ENST00000639002 FGF22Q9HCT0 170 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 PTTG2Q9NZH5 202 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 UBA2Q9UBT2 640 aaPredicted RBP3.75□□□□□ -1.81
CD44-239ENST00000639002 RASAL2Q9UJF2 1139 aa3.75□□□□□ -1.81
CD44-239ENST00000639002 MAGEB17A8MXT2 336 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 BUD23O43709 281 aaKnown RBP3.74□□□□□ -1.81
CD44-239ENST00000639002 SEC14L2O76054 403 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 KRT19P08727 400 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 HRH2P25021 359 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 PBX3P40426 434 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 PRCPP42785 496 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 SLC1A5Q15758 541 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 CCNG2Q16589 344 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 DUOXA1Q1HG43 343 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 SEPT14Q6ZU15 432 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 GTSCR1Q86UQ5 136 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 ZNF843Q8N446 348 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 SLC5A8Q8N695 610 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 GCSAMQ8N6F7 178 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 METTL6Q8TCB7 284 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 ZUFSPQ96AP4 578 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 POM121L2Q96KW2 1035 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 WDFY2Q96P53 400 aa3.74□□□□□ -1.81
CD44-239ENST00000639002 POLR1BQ9H9Y6 1135 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms