RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PLAGL2Q9UPG8 496 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CLUHO75153 1309 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 AURKAO14965 403 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ARPC2O15144 300 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CD247P20963 164 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 VAMP1P23763 118 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 FASTKD3Q14CZ7 662 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 CRTC2Q53ET0 693 aaPredicted RBP13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 KLHL35Q6PF15 583 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 ATP13A3Q9H7F0 1226 aa13.26□□□□□ -0.29
CCDC88A-204ENST00000413716 FAM237BA0A1B0GVD1 139 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 C19orf81C9J6K1 198 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 TGM6O95932 706 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 RAB10P61026 200 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 E2F1Q01094 437 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 FAAP100Q0VG06 881 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SYCE2Q6PIF2 218 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 BEND4Q6ZU67 534 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PARGQ86W56 976 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 BPIFB1Q8TDL5 484 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 EIF5A2Q9GZV4 153 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 C13orf42A0A1B0GVH6 325 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 GSTT2P0CG29 244 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PRKCHP24723 683 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 HSD11B1P28845 292 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SVOPLQ8N434 492 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 HEXDCQ8WVB3 486 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CLP1Q92989 425 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ARFRP1Q13795 201 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 TCF25Q9BQ70 676 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 MCMBPQ9BTE3 642 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAAF2Q9NVR5 837 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 EGFL7Q9UHF1 273 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PCDHGA8Q9Y5G5 932 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF878C9JN71 531 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 FAM86B2P0C5J1 330 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 HTR2AP28223 471 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PQLC1Q8N2U9 271 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ATP6V1C2Q8NEY4 427 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SEC14L1Q92503 715 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 HCN3Q9P1Z3 774 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 BARX2Q9UMQ3 279 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 NOP16Q9Y3C1 178 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 GRXCR2A6NFK2 248 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CABYRO75952 493 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PAN2Q504Q3 1202 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 MPZL3Q6UWV2 235 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAJB7Q7Z6W7 309 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 NINJ1Q92982 152 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CISHQ9NSE2 258 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 VIRMAQ69YN4 1812 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 NUDT7P0C024 238 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 LAMP2P13473 410 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ADRA1DP25100 572 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PLA2G4EQ3MJ16 856 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ARSHQ5FYA8 562 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 FAM83HQ6ZRV2 1179 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 FARSBQ9NSD9 589 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SHANK2Q9UPX8 1470 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 A0A087X0B3 334 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CLCN5P51795 746 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 GPR158Q5T848 1215 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SMARCD2Q92925 531 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 MALSU1Q96EH3 234 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 MSANTD3Q96H12 275 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 NODALQ96S42 347 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 TTC37Q6PGP7 1564 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CYP3A7-CYP3A51PA0A087WV96 503 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 RASGRP1O95267 797 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 GNB3P16520 340 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CYP3A7P24462 503 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 RPL21P46778 160 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 TLE3Q04726 772 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PITRM1Q5JRX3 1037 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 CERCAMQ5T4B2 595 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 PAQR7Q86WK9 346 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 RGL4Q8IZJ4 473 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ACBD4Q8NC06 268 aa13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 SAV1Q9H4B6 383 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-204ENST00000413716 ERAL1O75616 437 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF155Q12901 538 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF311Q5JNZ3 666 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 OGFOD2Q6N063 350 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 TOMM5Q8N4H5 51 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 IL17REQ8NFR9 667 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 OR2T12Q8NG77 320 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 OR10A4Q9H209 315 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 C1orf109Q9NX04 203 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PALLDQ8WX93 1383 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 VILLO15195 856 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PEX11AO75192 247 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 ABCA8O94911 1581 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 UQCRC1P31930 480 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 MAPK8P45983 427 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PRR5P85299 388 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 DUS1LQ6P1R4 473 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PTPRKQ15262 1439 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 PDPK1O15530 556 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 C21orf2O43822 256 aa13.24□□□□□ -0.29
CCDC88A-204ENST00000413716 POMCP01189 267 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms