RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SLC35G6P0C7Q6 338 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DEFA5Q01523 94 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF45Q02386 682 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF92Q03936 586 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 XKR3Q5GH77 459 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C11orf57Q6ZUT1 292 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AMER2Q8N7J2 671 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DLG3Q92796 817 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GCDHQ92947 438 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TIMD4Q96H15 378 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AKR1E2Q96JD6 320 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 DPYSL5Q9BPU6 564 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 WNT8AQ9H1J5 351 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FOXP1Q9H334 677 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CLEC4AQ9UMR7 237 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NAALADL1Q9UQQ1 740 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RGS12O14924 1447 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ATP10BO94823 1461 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ABCC10Q5T3U5 1492 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM120BA0PK00 339 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HELTA6NFD8 242 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MIF4GDA9UHW6 222 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LOC110117498-PIK3R3F6TDL0 507 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HAT1O14929 419 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MSH4O15457 936 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AP5Z1O43299 807 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC25A17O43808 307 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CCNKO75909 580 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CD2P06729 351 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IL12BP29460 328 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TYK2P29597 1187 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HOXA4Q00056 320 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CREB5Q02930 508 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MGAT5Q09328 741 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MOGSQ13724 837 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ANXA8L1Q5VT79 327 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SEL1L3Q68CR1 1132 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 FAM117BQ6P1L5 589 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CNSTQ6PJW8 725 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC137Q6PK04 289 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CYP4V2Q6ZWL3 525 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF572Q7Z3I7 529 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TC2NQ8N9U0 490 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TSTD1Q8NFU3 115 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OR10G6Q8NH81 332 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ASB9Q96DX5 294 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC39A2Q9NP94 309 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ZIM2Q9NZV7 527 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NXF1Q9UBU9 619 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RPL26L1Q9UNX3 145 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TNRC6AQ8NDV7 1962 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MAP3K19Q56UN5 1328 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 IQCMA0A1B0GVH7 501 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CPED1A4D0V7 1026 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 M0R2N6 131 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 AGR2O95994 175 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OPN1SWP03999 348 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2D6P10635 497 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MBL2P11226 248 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CHRM3P20309 590 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2B6P20813 491 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ITPKBP27987 946 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ADORA2BP29275 332 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MC4RP32245 332 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 KIR2DL3P43628 341 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 GPR15P49685 360 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MLLT6P55198 1093 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 VMACQ2NL98 169 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CHADLQ6NUI6 762 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TTC27Q6P3X3 843 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C16orf86Q6ZW13 317 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MTDHQ86UE4 582 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LENG9Q96B70 501 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TAMM41Q96BW9 452 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 MSI2Q96DH6 328 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SGF29Q96ES7 293 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LCORQ96JN0 433 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SNRNP25Q9BV90 132 aaKnown RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CAB39LQ9H9S4 337 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 OSGEPQ9NPF4 335 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 PNPLA3Q9NST1 481 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TAGLN3Q9UI15 199 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A14Q9Y267 594 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NRCAMQ92823 1304 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LGALS16A8MUM7 142 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ITM2AO43736 263 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TRIM3O75382 744 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINE1P05121 402 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TSPAN8P19075 237 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ATP6V1B2P21281 511 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 HLA-DMAP28067 261 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 BTDP43251 543 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 NUDT6P53370 316 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 RHBDL3P58872 404 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 TGFBR3Q03167 851 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 VAC14Q08AM6 782 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 ITPK1Q13572 414 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 CHI3L2Q15782 390 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 LHFPL3Q86UP9 236 aa2.77□□□□□ -1.97
SCN1A-219ENST00000641575 C10orf107Q8IVU9 208 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms