RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 EDEM2Q9BV94 578 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 GPR63Q9BZJ6 419 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 BPIFA1Q9NP55 256 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 RXFP3Q9NSD7 469 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 ELOVL2Q9NXB9 296 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 FKBPLQ9UIM3 349 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 SLC39A10Q9ULF5 831 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 PLA2G4CQ9UP65 541 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 PKP3Q9Y446 797 aa9.46□□□□□ -0.9
PDLIM5-223ENST00000627587 FAM95CA0A1B0GW59 222 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TMEM8BA6NDV4 472 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 C4orf47A7E2U8 309 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TCP11X1B4DZS4 312 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CD3EAPO15446 510 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PHGDHO43175 533 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 GLRA3O75311 464 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 MPOP05164 745 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 UGT2B4P06133 528 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CEACAM1P13688 526 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TAS2R39P59534 338 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 USP10Q14694 798 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PMS2CLQ68D20 193 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PSAPL1Q6NUJ1 521 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 C16orf46Q6P387 395 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 RGS9BPQ6ZS82 235 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SDCCAG8Q86SQ7 713 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CENPLQ8N0S6 344 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TERB1Q8NA31 727 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 GRIN3AQ8TCU5 1115 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SCRN2Q96FV2 425 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 NDNQ99608 321 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 HEPHQ9BQS7 1158 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 MECRQ9BV79 373 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 VPS11Q9H270 941 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 ZFYVE1Q9HBF4 777 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TMEM9BQ9NQ34 198 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CATSPERZQ9NTU4 200 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TMEM216Q9P0N5 145 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 DCDC2Q9UHG0 476 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PHTF1Q9UMS5 762 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 MED16Q9Y2X0 877 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 A0A096LPK6 155 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 C1orf232A0A0U1RR37 186 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TSPAN11A1L157 253 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 NDUFAB1O14561 156 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 LEFTY1O75610 366 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CLDN7O95471 211 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SBK3P0C264 359 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CHRM1P11229 460 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 OGNP20774 298 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SERPINB4P48594 390 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 STC1P52823 247 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 METAP1P53582 386 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SLC12A2P55011 1212 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CDKN2DP55273 166 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 DLG1Q12959 904 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 INSCQ1MX18 579 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 PREPLQ4J6C6 727 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 FASTKD1Q53R41 847 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 LRRC73Q5JTD7 316 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CRTC1Q6UUV9 634 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 GDPD4Q6W3E5 623 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 RAPH1Q70E73 1250 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 USP45Q70EL2 814 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 GPATCH11Q8N954 259 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 ARMC2Q8NEN0 867 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 ZNF473Q8WTR7 871 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SCG3Q8WXD2 468 aaKnown RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 CCDC97Q96F63 343 aaPredicted RBP9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 KLHL32Q96NJ5 620 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 GPR78Q96P69 363 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 FAM107BQ9H098 131 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TMEM245Q9H330 911 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SLCO1B3Q9NPD5 702 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 FGFR1OP2Q9NVK5 253 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 TLK1Q9UKI8 766 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 SARDHQ9UL12 918 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 MMP17Q9ULZ9 603 aa9.45□□□□□ -0.9
PDLIM5-223ENST00000627587 MAP1BP46821 2468 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 CNOT1A5YKK6 2376 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 EML5Q05BV3 1969 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 WDR91A4D1P6 747 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 TBC1D3BA6NDS4 549 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 A8MX80 341 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 PFDN6O15212 129 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 PLIN3O60664 434 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 DNAJC6O75061 913 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 PROCP04070 461 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 VIMP08670 466 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 HLA-EP13747 358 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 STMN1P16949 149 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 SAT1P21673 171 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 MC4RP32245 332 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 EIF2DP41214 584 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 NOVA1P51513 510 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 POLR2LP62875 67 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 POU4F1Q01851 419 aa9.44□□□□□ -0.9
PDLIM5-223ENST00000627587 FNDC3BQ53EP0 1204 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms