RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SERGEFQ9UGK8 458 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 MAFFQ9ULX9 164 aa4.53□□□□□ -1.68
LINC00540-201ENST00000611481 MN1Q10571 1320 aaPredicted RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 IGKV6-21A0A0C4DH24 114 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 CDRT15L2A8MXV6 281 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 E7ENX8 843 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 PPEF2O14830 753 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 AREL1O15033 823 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TMCC2O75069 709 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TNFSF15O95150 251 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 NFATC1O95644 943 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 LDLRP01130 860 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 CSTBP04080 98 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 OR4Q2P0C623 313 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 HTR1BP28222 390 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 NMT1P30419 496 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ARL4CP56559 192 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 RPL10AP62906 217 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TAP2Q03519 686 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 PIGFQ07326 219 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 NCBP1Q09161 790 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 NAB2Q15742 525 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 UGCGQ16739 394 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 EIF2S3LQ2VIR3 472 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TXNDC8Q6A555 127 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 AWAT2Q6E213 333 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ZNF66Q6ZN08 573 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TRMT11Q7Z4G4 463 aaKnown RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ITIH5Q86UX2 942 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 VASH2Q86V25 355 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 PLA2G4DQ86XP0 818 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 C9orf43Q8TAL5 461 aaPredicted RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 SAP25Q8TEE9 199 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 FRAT1Q92837 279 aaPredicted RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TMEM41AQ96HV5 264 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ZSCAN31Q96LW9 406 aaPredicted RBP4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ALG8Q9BVK2 526 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 TM9SF3Q9HD45 589 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ENTPD4Q9Y227 616 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 ASB3Q9Y575 518 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 RAD54BQ9Y620 910 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 JMJD1CQ15652 2540 aa4.52□□□□□ -1.69
LINC00540-201ENST00000611481 FAM170AA1A519 330 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TBC1D3BA6NDS4 549 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 PPP6CO00743 305 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 SYN3O14994 580 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 B4GALT5O43286 388 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 DFNA5O60443 496 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 EBLN1P0CF75 366 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 THEGLP0DJG4 465 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 NR2F6P10588 404 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 PCP11498 1178 aaKnown RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RARGP13631 454 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ARF4P18085 180 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RPS6KB1P23443 525 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ACP1P24666 158 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MPGP29372 298 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 AXLP30530 894 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 NTSR1P30989 418 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TNFRSF4P43489 277 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 C21orf59P57076 290 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MC2RQ01718 297 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 LAMTOR4Q0VGL1 99 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 KLRB1Q12918 225 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ZNF268Q14587 947 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 SHBQ15464 509 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ALX1Q15699 326 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ZNF77Q15935 545 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TAF12Q16514 161 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 UPP1Q16831 310 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 PLAC9Q5JTB6 97 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 GLRA4Q5JXX5 417 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MANEAQ5SRI9 462 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ARMC3Q5W041 872 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RUSC1-AS1Q66K80 236 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 SLC18B1Q6NT16 456 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RFX8Q6ZV50 586 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MAEAQ7L5Y9 396 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 SYTL1Q8IYJ3 562 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 CFAP52Q8N1V2 620 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ARL14Q8N4G2 192 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ZNF527Q8NB42 609 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RNF149Q8NC42 400 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 PRPF31Q8WWY3 499 aaKnown RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TMEM143Q96AN5 459 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ATXN7L3BQ96GX2 97 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 PRR11Q96HE9 360 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MRGPRX1Q96LB2 322 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 KLHL32Q96NJ5 620 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ZNF577Q9BSK1 485 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TTLL2Q9BWV7 592 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TMEM120AQ9BXJ8 343 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 RNF41Q9H4P4 317 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 HELLSQ9NRZ9 838 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 ERRFI1Q9UJM3 462 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 TUBD1Q9UJT1 453 aa4.51□□□□□ -1.69
LINC00540-201ENST00000611481 MAGED2Q9UNF1 606 aaPredicted RBP4.51□□□□□ -1.69
LINC00540-201ENST00000611481 COL6A5A8TX70 2615 aa4.5□□□□□ -1.69
LINC00540-201ENST00000611481 KCNJ18B7U540 433 aa4.5□□□□□ -1.69
LINC00540-201ENST00000611481 KPNA5O15131 536 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms