RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PRR11Q96HE9 360 aaPredicted RBP6.62□□□□□ -1.35
USP28-202ENST00000535607 ANKRD36BP1Q96IX9 119 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 MAGED4Q96JG8 741 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 CNDP1Q96KN2 507 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 SYT3Q9BQG1 590 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 HERPUD2Q9BSE4 406 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 SPATC1LQ9H0A9 340 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 UPF3AQ9H1J1 476 aaKnown RBP6.62□□□□□ -1.35
USP28-202ENST00000535607 ACAD9Q9H845 621 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 KMT5AQ9NQR1 393 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 TBC1D22BQ9NU19 505 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 POLR3BQ9NW08 1133 aaPredicted RBP6.62□□□□□ -1.35
USP28-202ENST00000535607 UTP6Q9NYH9 597 aaKnown RBP6.62□□□□□ -1.35
USP28-202ENST00000535607 SELENONQ9NZV5 590 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 MORF4L1Q9UBU8 362 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 MARCOQ9UEW3 520 aaPredicted RBP6.62□□□□□ -1.35
USP28-202ENST00000535607 WASF3Q9UPY6 502 aa6.62□□□□□ -1.35
USP28-202ENST00000535607 ADGRA2Q96PE1 1338 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 FUOMA2VDF0 154 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 H3BSA7 217 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 H7C0C1 242 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TRIM38O00635 465 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SNAP91O60641 907 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TADA2AO75478 443 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SERPINB7O75635 380 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 RFPL1O75677 317 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 BCAS2O75934 225 aaPredicted RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 IL18BPO95998 194 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PLA2G1BP04054 148 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 SPATA31D3P0C874 917 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 HSPA1AP0DMV8 641 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 HSPA1BP0DMV9 641 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 RBP3P10745 1247 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 RALBP11234 206 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ETS1P14921 441 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TNNI1P19237 187 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 POLR2EP19388 210 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 TGM2P21980 687 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 KDELR1P24390 212 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PSMA2P25787 234 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 HADHAP40939 763 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 MAGEA10P43363 369 aaPredicted RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 GPR3P46089 330 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ATP5OP48047 213 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 HARS2P49590 506 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 GPR15P49685 360 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 NUDT2P50583 147 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 KCNQ1P51787 676 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 LGALS4P56470 323 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SNX16P57768 344 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 MYL6P60660 151 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PSMC5P62195 406 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 KLF10Q13118 480 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 BTG3Q14201 252 aaPredicted RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 ZNF846Q147U1 533 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 CYTH1Q15438 398 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 STILQ15468 1287 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SURF1Q15526 300 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TRIM16LQ309B1 348 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ZBTB41Q5SVQ8 909 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SNRNP48Q6IEG0 339 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 DUS1LQ6P1R4 473 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 TMEM53Q6P2H8 277 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TTC33Q6PID6 262 aaPredicted RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 OLFML1Q6UWY5 402 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SPATA31D4Q6ZUB0 917 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 DENND5BQ6ZUT9 1274 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 KANSL1Q7Z3B3 1105 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 GPR180Q86V85 440 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 HPS6Q86YV9 775 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 CBWD2Q8IUF1 395 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 CLVS1Q8IUQ0 354 aaPredicted RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 CMIPQ8IY22 773 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 UNC5BQ8IZJ1 945 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 MCPH1Q8NEM0 835 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 DEPTORQ8TB45 409 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 RDH11Q8TC12 318 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 S100ZQ8WXG8 99 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SEMA4DQ92854 862 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PAWRQ96IZ0 340 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 PLEKHA8Q96JA3 519 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SNX27Q96L92 541 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ZNF597Q96LX8 424 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 FAM118BQ9BPY3 351 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 GPATCH1Q9BRR8 931 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 TMEM79Q9BSE2 394 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 TDRD1Q9BXT4 1180 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 SLC2A11Q9BYW1 496 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PAIP1Q9H074 479 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 MROH8Q9H579 483 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PRDM16Q9HAZ2 1276 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 MOV10Q9HCE1 1003 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 CD320Q9NPF0 282 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 RNF146Q9NTX7 359 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ASNSD1Q9NWL6 643 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 PKD2L2Q9NZM6 624 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 SUN2Q9UH99 717 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 IPO11Q9UI26 975 aaKnown RBP6.61□□□□□ -1.35
USP28-202ENST00000535607 RIMS3Q9UJD0 308 aa6.61□□□□□ -1.35
USP28-202ENST00000535607 ADAM28Q9UKQ2 775 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms