RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	LDB1	Q86U70	411 aa	Predicted RBP	11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	PIANP	Q8IYJ0	282 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	NRSN1	Q8IZ57	195 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	ZNF398	Q8TD17	642 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	CENPT	Q96BT3	561 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	ATXN7L3B	Q96GX2	97 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	ELMO2	Q96JJ3	720 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	KLF6	Q99612	283 aa	Predicted RBP	11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM83D	Q9H4H8	585 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM96A	Q9H5X1	160 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	PRDM6	Q9NQX0	595 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	SNX15	Q9NRS6	342 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	MKS1	Q9NXB0	559 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	NKIRAS1	Q9NYS0	192 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC39A10	Q9ULF5	831 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	SCML1	Q9UN30	329 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	SORCS3	Q9UPU3	1222 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	VWA7	Q9Y334	891 aa		11.72	□□□□□ -0.53
CLN6-223	ENST00000637823	TRBV5-4	A0A0C4DH59	114 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823		A0A1W2PQF6	199 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	C19orf67	A6NJJ6	358 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	AGAP14	A8MT82	685 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	NEMP1	O14524	444 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	TM9SF1	O15321	606 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	MID1	O15344	667 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	SPINT1	O43278	529 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	AP1G1	O43747	822 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ZWINT	O95229	277 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	PRAMEF1	O95521	474 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ELFN1	P0C7U0	828 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	PRSS56	P0CW18	603 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	C7	P10643	843 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	CHN1	P15882	459 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	CRABP2	P29373	138 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	CRHR1	P34998	444 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	DRD3	P35462	400 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	MDH1	P40925	334 aa	Known RBP	11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	PTGER3	P43115	390 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	LIG3	P49916	1009 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	CDKN1C	P49918	316 aa	Predicted RBP	11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	COPA	P53621	1224 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC12A2	P55011	1212 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	SFSWAP	Q12872	951 aa	Known RBP	11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	NFATC2	Q13469	925 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ITGA9	Q13797	1035 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	PDE1C	Q14123	709 aa	Predicted RBP	11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	MPP2	Q14168	576 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ACOX1	Q15067	660 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	INSC	Q1MX18	579 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM45BP	Q6NSW5	357 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	PSAPL1	Q6NUJ1	521 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	KIAA1211L	Q6NV74	962 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM151B	Q6UXP7	276 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	HSD11B1L	Q7Z5J1	315 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	TECPR1	Q7Z6L1	1165 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC41A1	Q8IVJ1	513 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	GPATCH11	Q8N954	259 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	MDM1	Q8TC05	714 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM45A	Q8TCE6	357 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	DENND1A	Q8TEH3	1009 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	LPGAT1	Q92604	370 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ULK4	Q96C45	1275 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	TSPAN17	Q96FV3	270 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	APOPT1	Q96IL0	206 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	SHD	Q96IW2	340 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	COQ10A	Q96MF6	247 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	OMD	Q99983	421 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ASB8	Q9H765	288 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	WNT16	Q9UBV4	365 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	DCDC2	Q9UHG0	476 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	TLK1	Q9UKI8	766 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	ANKRD6	Q9Y2G4	727 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	MRPS17	Q9Y2R5	130 aa	Known RBP	11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	CRYL1	Q9Y2S2	319 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	COMMD10	Q9Y6G5	202 aa		11.71	□□□□□ -0.53
CLN6-223	ENST00000637823	XIRP2	A4UGR9	3374 aa		11.71	□□□□□ -0.54
CLN6-223	ENST00000637823	DOCK9	Q9BZ29	2069 aa		11.71	□□□□□ -0.54
CLN6-223	ENST00000637823	PRUNE2	Q8WUY3	3088 aa		11.71	□□□□□ -0.54
CLN6-223	ENST00000637823	PLK4	O00444	970 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	WNT9A	O14904	365 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	TSPAN6	O43657	245 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	C2	P06681	752 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	GSTA1	P08263	222 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	COL6A2	P12110	1019 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	STMN1	P16949	149 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT1A6	P19224	532 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CD72	P21854	359 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT1A1	P22309	533 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT1A4	P22310	534 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	RPA3	P35244	121 aa	Predicted RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT1A3	P35503	534 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	UGT1A5	P35504	534 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	CSRP3	P50461	194 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ADAR	P55265	1226 aa	Known RBP	11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	TAS2R39	P59534	338 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	RAB10	P61026	200 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	ZBTB16	Q05516	673 aa		11.7	□□□□□ -0.54
CLN6-223	ENST00000637823	SEPT7	Q16181	437 aa	Known RBP	11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms