RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 Q6ZS52 159 aa30.44■■■□□ 2.46
CTCF-203ENST00000566078 ACVR1CQ8NER5 493 aa30.44■■■□□ 2.46
CTCF-203ENST00000566078 SCG3Q8WXD2 468 aaKnown RBP30.44■■■□□ 2.46
CTCF-203ENST00000566078 ASB8Q9H765 288 aa30.44■■■□□ 2.46
CTCF-203ENST00000566078 FAM95CA0A1B0GW59 222 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 PSMD11O00231 422 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 SPAG7O75391 227 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 TARSP26639 723 aaKnown RBP30.43■■■□□ 2.46
CTCF-203ENST00000566078 TTPAP49638 278 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 ATP1A2P50993 1020 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 CLCN5P51795 746 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 GYS2P54840 703 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 NFATC2Q13469 925 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 ACOX1Q15067 660 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 TMEM52BQ4KMG9 183 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP30.43■■■□□ 2.46
CTCF-203ENST00000566078 KDM7AQ6ZMT4 941 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 ZNF687Q8N1G0 1237 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 GPATCH11Q8N954 259 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 TCF12Q99081 682 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 SERGEFQ9UGK8 458 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 MRPS17Q9Y2R5 130 aaKnown RBP30.43■■■□□ 2.46
CTCF-203ENST00000566078 FADS3Q9Y5Q0 445 aa30.43■■■□□ 2.46
CTCF-203ENST00000566078 PIKFYVEQ9Y2I7 2098 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 NDUFS3O75489 264 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 RNASEH2AO75792 299 aaKnown RBP30.42■■■□□ 2.46
CTCF-203ENST00000566078 LRRC32Q14392 662 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 TMEM92Q6UXU6 159 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 Q6ZVL8 140 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 CMC1Q7Z7K0 106 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 ELMO2Q96JJ3 720 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 OMDQ99983 421 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 CAB39LQ9H9S4 337 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 KCNK9Q9NPC2 374 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 SNX15Q9NRS6 342 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 RAD18Q9NS91 495 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 SLC39A10Q9ULF5 831 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 CRYL1Q9Y2S2 319 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 DOCK9Q9BZ29 2069 aa30.42■■■□□ 2.46
CTCF-203ENST00000566078 PFDN6O15212 129 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 DCDC1P59894 354 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 UBXN2BQ14CS0 331 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 RNF187Q5TA31 235 aaPredicted RBP30.41■■■□□ 2.46
CTCF-203ENST00000566078 SLC41A1Q8IVJ1 513 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 SIX5Q8N196 739 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 ARFGAP2Q8N6H7 521 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 ZNF398Q8TD17 642 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 CXorf40AQ8TE69 158 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 GANCQ8TET4 914 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 ISL2Q96A47 359 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 SHDQ96IW2 340 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 FAM83DQ9H4H8 585 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 PCMTD2Q9NV79 361 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 CRLS1Q9UJA2 301 aa30.41■■■□□ 2.46
CTCF-203ENST00000566078 GM2AP17900 193 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 SAT1P21673 171 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 STARD6P59095 220 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 CCDC15Q0P6D6 951 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 RBM20Q5T481 1227 aaKnown RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 SH2D5Q6ZV89 423 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 TECPR1Q7Z6L1 1165 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 LPGAT1Q92604 370 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 NDNQ99608 321 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 LMAN1LQ9HAT1 526 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 LTB4R2Q9NPC1 389 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 FBXL12Q9NXK8 326 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 NFKBIL1Q9UBC1 381 aaPredicted RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 VPS9D1Q9Y2B5 631 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 COQ6Q9Y2Z9 468 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 MTF2Q9Y483 593 aaPredicted RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 UBA6A0AVT1 1052 aaPredicted RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 TMEM120BA0PK00 339 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 RGSL1A5PLK6 1076 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 C6P13671 934 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 UGT1A6P19224 532 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 UGT1A1P22309 533 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 UGT1A4P22310 534 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 TYK2P29597 1187 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 CA5AP35218 305 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 UGT1A3P35503 534 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 UGT1A5P35504 534 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 CCNFP41002 786 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 SLC18A2Q05940 514 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 USP10Q14694 798 aaKnown RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 SERPINA9Q86WD7 417 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 ALKBH8Q96BT7 664 aaKnown RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 SIPA1Q96FS4 1042 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 COQ10AQ96MF6 247 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 SPATA16Q9BXB7 569 aa30.4■■■□□ 2.46
CTCF-203ENST00000566078 SSU72Q9NP77 194 aaKnown RBP30.4■■■□□ 2.46
CTCF-203ENST00000566078 TRBV5-4A0A0C4DH59 114 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 TCRBV21S2A2A0A5A6 115 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 WNT9AO14904 365 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 AP1G1O43747 822 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 MMP20O60882 483 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 MAGEA12P43365 314 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 TAS2R38P59533 333 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 ILF2Q12905 390 aaKnown RBP30.39■■■□□ 2.46
CTCF-203ENST00000566078 NUMA1Q14980 2115 aa30.39■■■□□ 2.46
CTCF-203ENST00000566078 TTC31Q49AM3 519 aaPredicted RBP30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms