RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CD84Q9UIB8 345 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 NENFQ9UMX5 172 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 CHKBQ9Y259 395 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 UNC13CQ8NB66 2214 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 C1orf232A0A0U1RR37 186 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 SSU72P8A0A1W2PR75 194 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 RGSL1A5PLK6 1076 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 AKR1B10O60218 316 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 C1QL1O75973 258 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 SOD1P00441 154 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 HLA-DQB2P05538 268 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 HGFP14210 728 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 ZFXP17010 805 aaPredicted RBP13.05□□□□□ -0.32
RTN3-207ENST00000536011 AK4P27144 223 aaPredicted RBP13.05□□□□□ -0.32
RTN3-207ENST00000536011 POLD2P49005 469 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 GPLD1P80108 840 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 PTSQ03393 145 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 GBE1Q04446 702 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 PDAP1Q13442 181 aaKnown RBP13.05□□□□□ -0.32
RTN3-207ENST00000536011 ZNF605Q86T29 641 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 VSIG1Q86XK7 387 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 ZNF843Q8N446 348 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 ZSCAN1Q8NBB4 408 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 LPCAT1Q8NF37 534 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 SCAMP4Q969E2 229 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 LYSMD1Q96S90 227 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 DNAJC7Q99615 494 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 MAK16Q9BXY0 300 aaKnown RBP13.05□□□□□ -0.32
RTN3-207ENST00000536011 XPO4Q9C0E2 1151 aaKnown RBP13.05□□□□□ -0.32
RTN3-207ENST00000536011 DTLQ9NZJ0 730 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 PKD2L2Q9NZM6 624 aa13.05□□□□□ -0.32
RTN3-207ENST00000536011 ARHGEF17Q96PE2 2063 aaPredicted RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 ZNF462Q96JM2 2506 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 AHCTF1Q8WYP5 2266 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 LRRD1A4D1F6 860 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 PPP1R12AO14974 1030 aaPredicted RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 MAP3K6O95382 1288 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 ASMTLO95671 621 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 FUCA1P04066 466 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 SLC2A4P14672 509 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 KDELR1P24390 212 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 ARHGAP25P42331 645 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 MAPK10P53779 464 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 OR1D5P58170 312 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 TAS2R40P59535 323 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 IFI35P80217 286 aaPredicted RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 PPIDQ08752 370 aaKnown RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 SKOR2Q2VWA4 1001 aaPredicted RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 ATP13A4Q4VNC1 1196 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 PYCR3Q53H96 274 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 MANEAQ5SRI9 462 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 MARK2Q7KZI7 788 aaKnown RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 SFTPA2Q8IWL1 248 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 RHOT2Q8IXI1 618 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 PQLC3Q8N755 202 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 AVL9Q8NBF6 648 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 OR4D9Q8NGE8 314 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 ARRDC2Q8TBH0 407 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 TTC9Q92623 222 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 COX14Q96I36 57 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 RNF157Q96PX1 679 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 MLPHQ9BV36 600 aaPredicted RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 RIOK2Q9BVS4 552 aaKnown RBP13.04□□□□□ -0.32
RTN3-207ENST00000536011 SEMA6CQ9H3T2 930 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 RMI1Q9H9A7 625 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 RDH14Q9HBH5 336 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 RAD18Q9NS91 495 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 KCNK4Q9NYG8 393 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 TMEM98Q9Y2Y6 226 aa13.04□□□□□ -0.32
RTN3-207ENST00000536011 PRAMEF33A0A0G2JMD5 474 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 ANKRD66B4E2M5 251 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 APOL1O14791 398 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 B4GAT1O43505 415 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PRAMEF10O60809 474 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 CLDN7O95471 211 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 JCHAINP01591 159 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 ITIH1P19827 911 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 CD86P42081 329 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 FASLGP48023 281 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 SPINT3P49223 89 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PPM1FP49593 454 aaPredicted RBP13.03□□□□□ -0.32
RTN3-207ENST00000536011 SQSTM1Q13501 440 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 MESDQ14696 234 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PDK1Q15118 436 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PTPRRQ15256 657 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PCSK4Q6UW60 755 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 XKR5Q6UX68 686 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 USP53Q70EK8 1073 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 TRIM74Q86UV6 250 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 NAGSQ8N159 534 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 AGBL5Q8NDL9 886 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 OR10G6Q8NH81 332 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 USP7Q93009 1102 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 SH3KBP1Q96B97 665 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 SGF29Q96ES7 293 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 AHCYL2Q96HN2 611 aaKnown RBP13.03□□□□□ -0.32
RTN3-207ENST00000536011 CCDC42Q96M95 316 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 NUDT22Q9BRQ3 303 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 PACSIN1Q9BY11 444 aa13.03□□□□□ -0.32
RTN3-207ENST00000536011 BRD8Q9H0E9 1235 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms