RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 EPS15L1Q9UBC2 864 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 B4GALT6Q9UBX8 382 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 MED16Q9Y2X0 877 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 AGAP14A8MT82 685 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 DNAJC6O75061 913 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 TGDSO95455 350 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 PRAMEF1O95521 474 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 LTA4HP09960 611 aaKnown RBP15.4■□□□□ 0.06
LIMS1-202ENST00000338045 SPAM1P38567 509 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 PTGER3P43115 390 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 KPNA2P52292 529 aaKnown RBP15.4■□□□□ 0.06
LIMS1-202ENST00000338045 ZNF234Q14588 700 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 GRIN2CQ14957 1233 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 FAM83EQ2M2I3 478 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 ZYG11AQ6WRX3 759 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 MTSS1LQ765P7 747 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 SNX20Q7Z614 316 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 STK40Q8N2I9 435 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 ZNF366Q8N895 744 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 ANKS4BQ8N8V4 417 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 HEXDCQ8WVB3 486 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 SUSD6Q92537 303 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.4■□□□□ 0.06
LIMS1-202ENST00000338045 FAM96AQ9H5X1 160 aa15.4■□□□□ 0.06
LIMS1-202ENST00000338045 EDDM13A0A1B0GTR0 161 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 UBA6A0AVT1 1052 aaPredicted RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 TBC1D3BA6NDS4 549 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 UPK3BL1B0FP48 263 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 UPK3BL2E5RIL1 263 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 TK2O00142 265 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 SERPINE1P05121 402 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 TIMP2P16035 220 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 ZNF30P17039 623 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 HNRNPH2P55795 449 aaKnown RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 NFATC2Q13469 925 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 ITPRIPL2Q3MIP1 535 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 FNDC3BQ53EP0 1204 aaKnown RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 C9orf64Q5T6V5 341 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 AGAP9Q5VTM2 703 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 FAM151BQ6UXP7 276 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 EP400NLQ6ZTU2 488 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 PIM3Q86V86 326 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 ANKRD49Q8WVL7 239 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 MRPL57Q9BQC6 102 aaKnown RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 P2RY12Q9H244 342 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 MRPL46Q9H2W6 279 aaKnown RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 FNDC3AQ9Y2H6 1198 aaKnown RBP15.39■□□□□ 0.05
LIMS1-202ENST00000338045 ARL2BPQ9Y2Y0 163 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 COMMD10Q9Y6G5 202 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 XIRP2A4UGR9 3374 aa15.39■□□□□ 0.05
LIMS1-202ENST00000338045 GLYATL1P3A0A0U1RQE8 302 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 A8MX80 341 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ANHXE9PGG2 379 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 GPR39O43194 453 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 OR1I1O60431 355 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 KAT7O95251 611 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 C1SP09871 688 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 CCDC166P0CW27 439 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 CYP2A6P11509 494 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 PKMP14618 531 aaKnown RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ZNF37AP17032 561 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ITGALP20701 1170 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 GRK2P25098 689 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 FMO4P31512 558 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 GLRBP48167 497 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 STX3Q13277 289 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 CSHL1Q14406 222 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 GPR33Q49SQ1 333 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 PREPLQ4J6C6 727 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 SETMARQ53H47 684 aaPredicted RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 TECRLQ5HYJ1 363 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ZDHHC20Q5W0Z9 365 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 GPR26Q8NDV2 337 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 UCMAQ8WVF2 138 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 PLEKHG4BQ96PX9 1271 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 CCDC68Q9H2F9 335 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ASB8Q9H765 288 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 THAP1Q9NVV9 213 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 TAS2R13Q9NYV9 303 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 KLHL14Q9P2G3 628 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 CPSF2Q9P2I0 782 aaKnown RBP15.38■□□□□ 0.05
LIMS1-202ENST00000338045 XPR1Q9UBH6 696 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 HCN2Q9UL51 889 aa15.38■□□□□ 0.05
LIMS1-202ENST00000338045 ESR1P03372 595 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 PRNPP04156 253 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 MYL2P10916 166 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 RALBP11234 206 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 NFKBIAP25963 317 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 VIPR1P32241 457 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 PPARGP37231 505 aaPredicted RBP15.37■□□□□ 0.05
LIMS1-202ENST00000338045 GRIA2P42262 883 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 SPINT3P49223 89 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 SEMG2Q02383 582 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 SF3A3Q12874 501 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIMS1-202ENST00000338045 HTR4Q13639 388 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 ELAVL3Q14576 367 aaKnown RBP15.37■□□□□ 0.05
LIMS1-202ENST00000338045 ACAP2Q15057 778 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 CHRNA6Q15825 494 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 CTSL3PQ5NE16 218 aa15.37■□□□□ 0.05
LIMS1-202ENST00000338045 LYPLAL1Q5VWZ2 237 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms