RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NOGQ13253 232 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 EML3Q32P44 896 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 GRAMD1BQ3KR37 738 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 HECTD3Q5T447 861 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 FAM219BQ5XKK7 198 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 REP15Q6BDI9 236 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 PCDH20Q8N6Y1 951 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 PHC3Q8NDX5 983 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 OVCA2Q8WZ82 227 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 LPGAT1Q92604 370 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 EXT2Q93063 718 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 C19orf60Q96EN9 201 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 ZNF512Q96ME7 567 aaPredicted RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 TUBGCP5Q96RT8 1024 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 DDX50Q9BQ39 737 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 UNC93B1Q9H1C4 597 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SYTL2Q9HCH5 934 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 SPATS2LQ9NUQ6 558 aaKnown RBP10.06□□□□□ -0.8
VPS53-220ENST00000576149 CCDC167Q9P0B6 97 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 RIMS3Q9UJD0 308 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 MED16Q9Y2X0 877 aa10.06□□□□□ -0.8
VPS53-220ENST00000576149 ATP6AP2A0A1C7CYW4 349 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ILVBLA1L0T0 632 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TBKBP1A7MCY6 615 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 COCHO43405 550 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ATP6AP2O75787 350 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SIX3O95343 332 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 KLKB1P03952 638 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 INHAP05111 366 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ZCCHC18P0CG32 403 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 PIM1P11309 404 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 TUFMP49411 452 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 ACADVLP49748 655 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ADGRE1Q14246 886 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 CYTH1Q15438 398 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TAF1AQ15573 450 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 PFKFB4Q16877 469 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 MMEL1Q495T6 779 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SETMARQ53H47 684 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 RNF220Q5VTB9 566 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 AFTPHQ6ULP2 937 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 GLT6D1Q7Z4J2 308 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 RAB44Q7Z6P3 723 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 FAM126BQ8IXS8 530 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ICA1LQ8NDH6 482 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 MDGA1Q8NFP4 955 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 OR4K2Q8NGD2 314 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SNRNP27Q8WVK2 155 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 PLD4Q96BZ4 506 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 RMDN1Q96DB5 314 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ASB9Q96DX5 294 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 EXOC2Q96KP1 924 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 C3orf30Q96M34 536 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TCF12Q99081 682 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SLC25A23Q9BV35 468 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TDRD1Q9BXT4 1180 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 YIPF3Q9GZM5 350 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 DERL2Q9GZP9 239 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 HMX1Q9NP08 348 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 MRPL40Q9NQ50 206 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 ADA2Q9NZK5 511 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 MTRRQ9UBK8 725 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 DTNAQ9Y4J8 743 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 DNAJC15Q9Y5T4 150 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 PRSS51A0A1B0GVH4 220 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 UBA6A0AVT1 1052 aaPredicted RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 E7ENX8 843 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 PPP6CO00743 305 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 KERAO60938 352 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 STC2O76061 302 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 RHOBTB1O94844 696 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 EFEMP2O95967 443 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 F11P03951 625 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 RHOCP08134 193 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 ALDOCP09972 364 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 HDCP19113 662 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 CES1P23141 567 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 CORO1AP31146 461 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 FMO4P31512 558 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 OR1D2P34982 312 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SGSHP51688 502 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TRIM25Q14258 630 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 PAOXQ6QHF9 649 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 PAQR3Q6TCH7 311 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 CHST9Q7L1S5 443 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 LILRA2Q8N149 483 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 FAM156AQ8NDB6 213 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 STAG3L4Q8TBR4 150 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 KIAA1191Q96A73 305 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 LRGUKQ96M69 825 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 KLHL32Q96NJ5 620 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 CWH43Q9H720 699 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 AKTIPQ9H8T0 292 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 FBRSL1Q9HCM7 1045 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 SCUBE2Q9NQ36 999 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 TAS2R13Q9NYV9 303 aa10.05□□□□□ -0.8
VPS53-220ENST00000576149 SUCOQ9UBS9 1254 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 AGO1Q9UL18 857 aaKnown RBP10.05□□□□□ -0.8
VPS53-220ENST00000576149 TBC1D30Q9Y2I9 924 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms