RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SOD1P00441 154 aa21■□□□□ 0.95
VPS53-216ENST00000574029 GOLGA6DP0CG33 693 aa21■□□□□ 0.95
VPS53-216ENST00000574029 RARAP10276 462 aa21■□□□□ 0.95
VPS53-216ENST00000574029 FGF3P11487 239 aaPredicted RBP21■□□□□ 0.95
VPS53-216ENST00000574029 SFTPCP11686 197 aa21■□□□□ 0.95
VPS53-216ENST00000574029 ARSDP51689 593 aa21■□□□□ 0.95
VPS53-216ENST00000574029 LIMK2P53671 638 aa21■□□□□ 0.95
VPS53-216ENST00000574029 KLHL30Q0D2K2 578 aa21■□□□□ 0.95
VPS53-216ENST00000574029 MARC1Q5VT66 337 aa21■□□□□ 0.95
VPS53-216ENST00000574029 USP45Q70EL2 814 aa21■□□□□ 0.95
VPS53-216ENST00000574029 ATPAF2Q8N5M1 289 aa21■□□□□ 0.95
VPS53-216ENST00000574029 OR4D9Q8NGE8 314 aa21■□□□□ 0.95
VPS53-216ENST00000574029 NSMCE1Q8WV22 266 aa21■□□□□ 0.95
VPS53-216ENST00000574029 PIH1D2Q8WWB5 315 aa21■□□□□ 0.95
VPS53-216ENST00000574029 TAAR9Q96RI9 348 aa21■□□□□ 0.95
VPS53-216ENST00000574029 GOLGA6AQ9NYA3 693 aa21■□□□□ 0.95
VPS53-216ENST00000574029 MYO18BQ8IUG5 2567 aa21■□□□□ 0.95
VPS53-216ENST00000574029 FZD6O60353 706 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 FAM87AP0C7U9 286 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 PTMSP20962 102 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 GPR1P46091 355 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 CYP4F2P78329 520 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 BIRC2Q13490 618 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 NKAIN2Q5VXU1 208 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 TXNRD3NBQ6F5E7 133 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 ADAMTSL4Q6UY14 1074 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 TEX26Q8N6G2 289 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 TEKT4Q8WW24 435 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 HTR3CQ8WXA8 447 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 CDH19Q9H159 772 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 ABCG8Q9H221 673 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 PLEKHM1Q9Y4G2 1056 aa20.99■□□□□ 0.95
VPS53-216ENST00000574029 IGHV1OR21-1A0A087WYE8 117 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 PDHA1P08559 390 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 CTPS1P17812 591 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 CSF2RBP32927 897 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 SERPINB6P35237 376 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 ACTR1BP42025 376 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 CSRP3P50461 194 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 ACTR1AP61163 376 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 TYRO3Q06418 890 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 PIGHQ14442 188 aaPredicted RBP20.98■□□□□ 0.95
VPS53-216ENST00000574029 DOK6Q6PKX4 331 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 RFLNAQ6ZTI6 216 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 NLRP8Q86W28 1048 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 NKD1Q969G9 470 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 PMEPA1Q969W9 287 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 AP2M1Q96CW1 435 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 OR2M4Q96R27 311 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 DPYSL5Q9BPU6 564 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 FUCA2Q9BTY2 467 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 NAT10Q9H0A0 1025 aaKnown RBP20.98■□□□□ 0.95
VPS53-216ENST00000574029 PCDH18Q9HCL0 1135 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 CD84Q9UIB8 345 aa20.98■□□□□ 0.95
VPS53-216ENST00000574029 ZFC3H1O60293 1989 aaKnown RBP20.97■□□□□ 0.95
VPS53-216ENST00000574029 A0A0U1RQS6 177 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 TERTO14746 1132 aaKnown RBP20.97■□□□□ 0.95
VPS53-216ENST00000574029 THRAP10827 490 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 SKILP12757 684 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 ATP1A2P50993 1020 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 PTSQ03393 145 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 PYCR3Q53H96 274 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 LRRC66Q68CR7 880 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 ZNF765Q7L2R6 523 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 NDUFAF2Q8N183 169 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 NIPA2Q8N8Q9 360 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 AGBL5Q8NDL9 886 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 JPH3Q8WXH2 748 aaPredicted RBP20.97■□□□□ 0.95
VPS53-216ENST00000574029 BPIFA3Q9BQP9 254 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 SLC12A9Q9BXP2 914 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 NT5MQ9NPB1 228 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 KCNK4Q9NYG8 393 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 TMEM98Q9Y2Y6 226 aa20.97■□□□□ 0.95
VPS53-216ENST00000574029 SUV39H1O43463 412 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 ZNF30P17039 623 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 FASLGP48023 281 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 GPLD1P80108 840 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 NFKB2Q00653 900 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 SLC25A11Q02978 314 aaKnown RBP20.96■□□□□ 0.95
VPS53-216ENST00000574029 ANO6Q4KMQ2 910 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 FILIP1LQ4L180 1135 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 LRRC49Q8IUZ0 686 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 CCDC112Q8NEF3 446 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 SCAMP4Q969E2 229 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 SMIM14Q96QK8 99 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 DDA1Q9BW61 102 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 TMEM9Q9P0T7 183 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 IL17BQ9UHF5 180 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 B3GALT1Q9Y5Z6 326 aa20.96■□□□□ 0.95
VPS53-216ENST00000574029 A0A0J9YYE9 177 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 TRBC1P01850 177 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 PYGLP06737 847 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 IL4RP24394 825 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 MPSTP25325 297 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 CSTF2P33240 577 aaKnown RBP eCLIP20.95■□□□□ 0.94
VPS53-216ENST00000574029 LRP8Q14114 963 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 CLCA4Q14CN2 919 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 ALG1LQ6GMV1 187 aa20.95■□□□□ 0.94
VPS53-216ENST00000574029 CAVIN1Q6NZI2 390 aaKnown RBP20.95■□□□□ 0.94
VPS53-216ENST00000574029 TMEM71Q6P5X7 295 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms