RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HCN2Q9UL51 889 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 VWA7Q9Y334 891 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 GRXCR2A6NFK2 248 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 BPIP17213 487 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 EIF2DP41214 584 aaKnown RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 GRIA2P42262 883 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 CDKN2DP55273 166 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 SF3A3Q12874 501 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLN3-209ENST00000561689 CCDC85BQ15834 202 aaPredicted RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 INSCQ1MX18 579 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 AAK1Q2M2I8 961 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 ZNF805Q5CZA5 627 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 TAS2R42Q7RTR8 314 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 SPATA6LQ8N4H0 392 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 KDM1BQ8NB78 822 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 UCMAQ8WVF2 138 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 ZNF75CPQ92670 426 aaPredicted RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 LRCH3Q96II8 777 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 ACOX2Q99424 681 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 GAS2L1Q99501 681 aaPredicted RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 OSBPL1AQ9BXW6 950 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 IL26Q9NPH9 171 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 SARDHQ9UL12 918 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 ACOT9Q9Y305 439 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 EDDM13A0A1B0GTR0 161 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 UBA6A0AVT1 1052 aaPredicted RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 PLIN3O60664 434 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 NDUFS3O75489 264 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 TIMP2P16035 220 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 KCNA5P22460 613 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 CRABP2P29373 138 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 PTSQ03393 145 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 TTC7BQ86TV6 843 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 LRIG1Q96JA1 1093 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 INTS10Q9NVR2 710 aaKnown RBP21.21■□□□□ 0.99
CLN3-209ENST00000561689 SLC30A1Q9Y6M5 507 aa21.21■□□□□ 0.99
CLN3-209ENST00000561689 GAPDHSO14556 408 aaPredicted RBP21.2■□□□□ 0.98
CLN3-209ENST00000561689 PRAMEF1O95521 474 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 CHRM1P11229 460 aaPredicted RBP21.2■□□□□ 0.98
CLN3-209ENST00000561689 NEFHP12036 1026 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 IL12RB1P42701 662 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 METAP1P53582 386 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 EGFLAMQ63HQ2 1017 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 FAM47EQ6ZV65 393 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 KCTD4Q8WVF5 259 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 LPGAT1Q92604 370 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 TCF12Q99081 682 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 C1QTNF1Q9BXJ1 281 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 SLCO1B3Q9NPD5 702 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 PCDH12Q9NPG4 1184 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 CACNA2D2Q9NY47 1150 aa21.2■□□□□ 0.98
CLN3-209ENST00000561689 KPNA3O00505 521 aaPredicted RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 OR1I1O60431 355 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 SRP72O76094 671 aaKnown RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 PROCP04070 461 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 APODP05090 189 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 GSTA1P08263 222 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 BGNP21810 368 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 FMO4P31512 558 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 GALK1P51570 392 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 CACNG1Q06432 222 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 RFLNAQ6ZTI6 216 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 PIM3Q86V86 326 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 CENPLQ8N0S6 344 aaPredicted RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 CSGALNACT1Q8TDX6 532 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 PBXIP1Q96AQ6 731 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 FAM136AQ96C01 138 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 UNKQ9C0B0 810 aaKnown RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 MANSC1Q9H8J5 431 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 THAP10Q9P2Z0 257 aaPredicted RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 ANKRD6Q9Y2G4 727 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 MTF2Q9Y483 593 aaPredicted RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 DENND4AQ7Z401 1863 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 TSPAN11A1L157 253 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 C16orf96A6NNT2 1141 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 UPK3BL1B0FP48 263 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 UPK3BL2E5RIL1 263 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 CA5AP35218 305 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 TTPAP49638 278 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 RGS9BPQ6ZS82 235 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 GPR26Q8NDV2 337 aa21.19■□□□□ 0.98
CLN3-209ENST00000561689 RUVBL2Q9Y230 463 aaKnown RBP21.19■□□□□ 0.98
CLN3-209ENST00000561689 GLYATL1P3A0A0U1RQE8 302 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 C2CD4DB7Z1M9 353 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 XPAP23025 273 aaPredicted RBP21.18■□□□□ 0.98
CLN3-209ENST00000561689 GLRBP48167 497 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 FAM45BPQ6NSW5 357 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 NUDCD3Q8IVD9 361 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 FAM45AQ8TCE6 357 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 OR8D1Q8WZ84 308 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 TSPAN17Q96FV3 270 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 ASB8Q9H765 288 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 NMRAL1Q9HBL8 299 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 GPAMQ9HCL2 828 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 DKK3Q9UBP4 350 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 PPM1HQ9ULR3 514 aa21.18■□□□□ 0.98
CLN3-209ENST00000561689 PRNPP04156 253 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 EPHX1P07099 455 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 BPGMP07738 259 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 C1SP09871 688 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms