RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	FAM153C	Q494X1	144 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	HENMT1	Q5T8I9	393 aa	Known RBP	13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	LAYN	Q6UX15	382 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	GCNT7	Q6ZNI0	430 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	UNC5B	Q8IZJ1	945 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	PDIK1L	Q8N165	341 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	PPHLN1	Q8NEY8	458 aa	Known RBP	13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	C1orf216	Q8TAB5	229 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	ZC3H10	Q96K80	434 aa	Known RBP	13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	SLC6A18	Q96N87	628 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	IL26	Q9NPH9	171 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	TMEM74B	Q9NUR3	256 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	NLE1	Q9NVX2	485 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	PKD2L2	Q9NZM6	624 aa		13.45	□□□□□ -0.26
PTPN7-218	ENST00000496197	ZCWPW2	A0A1B0GU75	182 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	POM121B	A6NF01	834 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	MEI4	A8MW99	385 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	AP3B1	O00203	1094 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	STX7	O15400	261 aa	Known RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	PCCB	P05166	539 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CNR2	P34972	360 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CDKN1C	P49918	316 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	SIM2	Q14190	667 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CASC4	Q6P4E1	433 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	FAM151B	Q6UXP7	276 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	PRR23B	Q6ZRT6	265 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CEP68	Q76N32	757 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	LPCAT2	Q7L5N7	544 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CYP2U1	Q7Z449	544 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CCDC25	Q86WR0	208 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	IFT20	Q8IY31	132 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	ZBED8	Q8IZ13	594 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	TMEM145	Q8NBT3	493 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	FBXO36	Q8NEA4	188 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	STYX	Q8WUJ0	223 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	UBXN4	Q92575	508 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CCDC97	Q96F63	343 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	STAMBPL1	Q96FJ0	436 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CDKN2AIPNL	Q96HQ2	116 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	BMF	Q96LC9	184 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	TBATA	Q96M53	351 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	SRPK1	Q96SB4	655 aa	Known RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	EBNA1BP2	Q99848	306 aa	Known RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	RIOK2	Q9BVS4	552 aa	Known RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	PCED1A	Q9H1Q7	454 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	CAAP1	Q9H8G2	361 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	MRM3	Q9HC36	420 aa	Known RBP	13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	SAYSD1	Q9NPB0	183 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	FAM86C1	Q9NVL1	165 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	TMPRSS11E	Q9UL52	423 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	PKP3	Q9Y446	797 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	MAD1L1	Q9Y6D9	718 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	SDK1	Q7Z5N4	2213 aa		13.44	□□□□□ -0.26
PTPN7-218	ENST00000496197	WNT1	P04628	370 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	F7	P08709	466 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	HNRNPA2B1	P22626	353 aa	Known RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	TNFRSF8	P28908	595 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	SPAM1	P38567	509 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	DHPS	P49366	369 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	DCDC1	P59894	354 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	SGCG	Q13326	291 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	CUL1	Q13616	776 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	LRRC14	Q15048	493 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	CHRNA6	Q15825	494 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	ANKRD20A4	Q4UJ75	823 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	SETMAR	Q53H47	684 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	DNAJC21	Q5F1R6	531 aa	Known RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	TPRG1L	Q5T0D9	272 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	CENPU	Q71F23	418 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	TMEM135	Q86UB9	458 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	ASB12	Q8WXK4	309 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	DNASE2B	Q8WZ79	361 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	HDAC10	Q969S8	669 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	ZNF669	Q96BR6	464 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	AP2M1	Q96CW1	435 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	SERAC1	Q96JX3	654 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	C9orf72	Q96LT7	481 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	LENG8	Q96PV6	779 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	PLEKHG4B	Q96PX9	1271 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	FMO2	Q99518	471 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	FAM83D	Q9H4H8	585 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	GON4L	Q3T8J9	2241 aa		13.43	□□□□□ -0.26
PTPN7-218	ENST00000496197	FAM237B	A0A1B0GVD1	139 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	CCDC162P	A2VCL2	907 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	GOLGA8K	D6RF30	607 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	GOLGA8T	H3BQL2	631 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197		H7C0S8	307 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	NDC80	O14777	642 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A9	O60656	530 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A6	P19224	532 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A1	P22309	533 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A4	P22310	534 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	CD27	P26842	260 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A3	P35503	534 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	UGT1A5	P35504	534 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	ARCN1	P48444	511 aa	Known RBP	13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	DPT	Q07507	201 aa		13.42	□□□□□ -0.26
PTPN7-218	ENST00000496197	SEMA3A	Q14563	771 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms