RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TIPARPQ7Z3E1 657 aaKnown RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 TECPR1Q7Z6L1 1165 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 AGBL5Q8NDL9 886 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 OR4D9Q8NGE8 314 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 HSPH1Q92598 858 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 NUDCD1Q96RS6 583 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 ZWILCHQ9H900 591 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 LMBRD1Q9NUN5 540 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 PARVAQ9NVD7 372 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 TRNAU1APQ9NX07 287 aaKnown RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 KCNK4Q9NYG8 393 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 CHMP5Q9NZZ3 219 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 AKAP7Q9P0M2 348 aaPredicted RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 MYO1AQ9UBC5 1043 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 SLC17A4Q9Y2C5 497 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 MRPS18BQ9Y676 258 aaKnown RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 COL6A6A6NMZ7 2263 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 SCN8AQ9UQD0 1980 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 K7EM74 188 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PDE2AO00408 941 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 HGSO14964 777 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 PGLSO95336 258 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 FTLP02792 175 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 ATP1A1P05023 1023 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 IVLP07476 585 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 SKILP12757 684 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 FERP16591 822 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 NR1D1P20393 614 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 CDK11BP21127 795 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 CD82P27701 267 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 CSTF2P33240 577 aaKnown RBP eCLIP8.06□□□□□ -1.12
VIM-202ENST00000421459 GPR3P46089 330 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ATP1A2P50993 1020 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 RENBPP51606 427 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 NFATC2Q13469 925 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 NCAPHQ15003 741 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 TSR1Q2NL82 804 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 DEFB109BQ30KR1 87 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PYCR3Q53H96 274 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 CT47A1Q5JQC4 288 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 ZNF648Q5T619 568 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 LRRC66Q68CR7 880 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 TMEM71Q6P5X7 295 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ZNF571Q7Z3V5 609 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 POLNQ7Z5Q5 900 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 CPNE8Q86YQ8 564 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 BMPERQ8N8U9 685 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ZNF564Q8TBZ8 553 aaPredicted RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 SLC37A2Q8TED4 501 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PIH1D2Q8WWB5 315 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 NCSTNQ92542 709 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 RTP4Q96DX8 246 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 SCRN2Q96FV2 425 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 BTBD6Q96KE9 485 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 OR2M4Q96R27 311 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ERGIC2Q96RQ1 377 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 SLC38A3Q99624 504 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 RIOK2Q9BVS4 552 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 SPRY4Q9C004 299 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ZMYND15Q9H091 742 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 HAUS4Q9H6D7 363 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 ARFGAP3Q9NP61 516 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 NT5MQ9NPB1 228 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 CNOT8Q9UFF9 292 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 KLHL3Q9UH77 587 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PILRAQ9UKJ1 303 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PHTF1Q9UMS5 762 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 PCDHGA3Q9Y5H0 932 aa8.06□□□□□ -1.12
VIM-202ENST00000421459 OAS3Q9Y6K5 1087 aaKnown RBP8.06□□□□□ -1.12
VIM-202ENST00000421459 UTP20O75691 2785 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 ZFC3H1O60293 1989 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 LRRC10BA6NIK2 292 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 LRRC53A6NM62 1247 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 DDX3XO00571 662 aaKnown RBP eCLIP8.05□□□□□ -1.12
VIM-202ENST00000421459 SNX2O60749 519 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 SOCS5O75159 536 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 RNF8O76064 485 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CLDN7O95471 211 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ASMTLO95671 621 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CD48P09326 243 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 RARAP10276 462 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CYP2A6P11509 494 aaPredicted RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 SFTPCP11686 197 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 F8A1P23610 371 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 OAS2P29728 719 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 MMP13P45452 471 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 MAPK9P45984 424 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 HCAR3P49019 387 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 DSC2Q02487 901 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ITKQ08881 620 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 MMRN1Q13201 1228 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 SQSTM1Q13501 440 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 TRA2AQ13595 282 aaKnown RBP eCLIP8.05□□□□□ -1.12
VIM-202ENST00000421459 UBAP2LQ14157 1087 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 DCAF12Q5T6F0 453 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ARMC12Q5T9G4 340 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 HIST2H2BCQ6DN03 193 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 C16orf46Q6P387 395 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ADAMTSL4Q6UY14 1074 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms