RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 BTBD8Q5XKL5 378 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 LINC00523Q86TU6 105 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 CLEC4FQ8N1N0 589 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 MFSD4AQ8N468 514 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PDPRQ8NCN5 879 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PSMA8Q8TAA3 256 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NUDT8Q8WV74 236 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 HDAC11Q96DB2 347 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 FAR2Q96K12 515 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 TEX37Q96LM6 180 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 CYP3A43Q9HB55 503 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NTN4Q9HB63 628 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PRDM8Q9NQV8 689 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 IGSF5Q9NSI5 407 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 NUDT5Q9UKK9 219 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 TCRBV5S2A0A599 114 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 JCHAINP01591 159 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 UBA1P22314 1058 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 PIGAP37287 484 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 SLC1A2P43004 574 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 GP2P55259 537 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 FKBP1AP62942 108 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ADPRMQ3LIE5 342 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 UGT3A1Q6NUS8 523 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 RALGPS2Q86X27 583 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 SCML4Q8N228 414 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ANKRD49Q8WVL7 239 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 MAGED4Q96JG8 741 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 MRPL57Q9BQC6 102 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ABCB10Q9NRK6 738 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 ABCD2Q9UBJ2 740 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 BTRCQ9Y297 605 aa13.44□□□□□ -0.26
CCDC88C-201ENST00000331194 AP3B1O00203 1094 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 IPO13O94829 963 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 CHEK2O96017 543 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 UGT2B4P06133 528 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ERCC2P18074 760 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ARNTP27540 789 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 PLIN5Q00G26 463 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 LIPEQ05469 1076 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 INCA1Q0VD86 236 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 OR6B3Q8NGW1 331 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 BIRC7Q96CA5 298 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 C19orf60Q96EN9 201 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 CELF6Q96J87 481 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 CNDP2Q96KP4 475 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 PAK1IP1Q9NWT1 392 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 DPP3Q9NY33 737 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 RABL2AQ9UBK7 228 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ANAPC2Q9UJX6 822 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 NDUFAF1Q9Y375 327 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 I6L893 689 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 EEF2KO00418 725 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 UGT2B11O75310 529 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 TOMM70O94826 608 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 DIO3P55073 304 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ECT2LQ008S8 904 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 LAPTM5Q13571 262 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 TMEM132BQ14DG7 1078 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 PAGE3Q5JUK9 113 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 UBE2UQ5VVX9 321 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 SYPL2Q5VXT5 272 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ZNF470Q6ECI4 717 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 XRRA1Q6P2D8 792 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 GADL1Q6ZQY3 521 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 KIAA0408Q6ZU52 694 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 RBM23Q86U06 439 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 LDB1Q86U70 411 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ABI1Q8IZP0 508 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 GLMNQ92990 594 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 EFHD2Q96C19 240 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 TRIM15Q9C019 465 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 TOR3AQ9H497 397 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 ALG2Q9H553 416 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 GDAP2Q9NXN4 497 aa13.43□□□□□ -0.26
CCDC88C-201ENST00000331194 CCDC162PA2VCL2 907 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ZNF487B1APH4 448 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 XPNPEP2O43895 674 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 SIX3O95343 332 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 SPNP16150 400 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ENDOUP21128 410 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 NDUFV1P49821 464 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TPD52P55327 224 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LY6KQ17RY6 165 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 SDR16C5Q8N3Y7 309 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TMBIM1Q969X1 311 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ROPN1LQ96C74 230 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 CDHR1Q96JP9 859 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 KCTD14Q9BQ13 255 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 RHOBTB2Q9BYZ6 727 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 TRIT1Q9H3H1 467 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 GSTO2Q9H4Y5 243 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 ENPP5Q9UJA9 477 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 A0A087WZ62 844 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 A0A1B0GTL3 188 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LINC00032P0C843 101 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 HSD17B1P14061 328 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 LMO2P25791 158 aa13.42□□□□□ -0.26
CCDC88C-201ENST00000331194 GSTM2P28161 218 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms