RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RHBDF2Q6PJF5 856 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 FAM151BQ6UXP7 276 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 POC5Q8NA72 575 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 GPR156Q8NFN8 814 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 STYXQ8WUJ0 223 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 NDRG1Q92597 394 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 CLP1Q92989 425 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 SLITRK2Q9H156 845 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CLEC4MQ9H2X3 399 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 ADGRE2Q9UHX3 823 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 TCAF1Q9Y4C2 921 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 TBC1D3BA6NDS4 549 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 H3BNX3 289 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 SUV39H1O43463 412 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 MMP3P08254 477 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CYP3A5P20815 502 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 FOXN2P32314 431 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 RALGDSQ12967 914 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 GPR158Q5T848 1215 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 MOB2Q70IA6 237 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CYP4X1Q8N118 509 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 CCDC185Q8N715 623 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 NIPA2Q8N8Q9 360 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ST13P5Q8NFI4 369 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 TBATAQ96M53 351 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 PPM1MQ96MI6 270 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 EIF2B3Q9NR50 452 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 ASAH2Q9NR71 780 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ABCB10Q9NRK6 738 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.74□□□□□ -0.69
CD44-201ENST00000263398 AJAP1Q9UKB5 411 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 SAMD4AQ9UPU9 718 aaKnown RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 SLC9A8Q9Y2E8 581 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 PCDHA2Q9Y5H9 948 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 SQORQ9Y6N5 450 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 NR2F1P10589 423 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 TLX1P31314 330 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 GPR1P46091 355 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 MBTD1Q05BQ5 628 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ACAP2Q15057 778 aa10.74□□□□□ -0.69
CD44-201ENST00000263398 ZNF513Q8N8E2 541 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 ZNF624Q9P2J8 865 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 ARIH1Q9Y4X5 557 aaPredicted RBP10.74□□□□□ -0.69
CD44-201ENST00000263398 A0A1W2PQH9 124 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 KCNU1A8MYU2 1149 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 G3V2T6 193 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SNPHO15079 494 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 TMEM63AO94886 807 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 GTF2E2P29084 291 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 TRAP1Q12931 704 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 TARBP2Q15633 366 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 SLC10A6Q3KNW5 377 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 MZT2BQ6NZ67 158 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 TWIST2Q8WVJ9 160 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 MCRS1Q96EZ8 462 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 TSSK3Q96PN8 268 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SLC38A2Q96QD8 506 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 LYVE1Q9Y5Y7 322 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 H0YC42 278 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 MATN3O15232 486 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 NBNO60934 754 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 LRATO95237 230 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 UMPSP11172 480 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 JAK1P23458 1154 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SLC6A2P23975 617 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 POLR2JP52435 117 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 GDF10P55107 478 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 LILRA4P59901 499 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 MPP1Q00013 466 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 LSM12Q3MHD2 195 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 RNF220Q5VTB9 566 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 CACUL1Q86Y37 369 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 ZNF781Q8N8C0 355 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 ZNF671Q8TAW3 534 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 BORCS5Q969J3 196 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 BRD9Q9H8M2 597 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 DTLQ9NZJ0 730 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 IGSF9Q9P2J2 1179 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 GRIN2DO15399 1336 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 E9PAM4 449 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SERPINB7O75635 380 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 OR6B1O95007 311 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SP100P23497 879 aaPredicted RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 CSNK2BP67870 215 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 POU5F1Q01860 360 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 ABRQ12979 859 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 LCP2Q13094 533 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 HNRNPDQ14103 355 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 HLA-DQA1Q5Y7H0 255 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 RAET1GQ6H3X3 334 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 MZT2AQ6P582 158 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 TRMT10BQ6PF06 316 aaKnown RBP10.73□□□□□ -0.69
CD44-201ENST00000263398 SPPL2CQ8IUH8 684 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 FAM20CQ8IXL6 584 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 PYROXD2Q8N2H3 581 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 OR52L1Q8NGH7 329 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 SPATA22Q8NHS9 363 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 CXorf40AQ8TE69 158 aa10.73□□□□□ -0.69
CD44-201ENST00000263398 TIFAQ96CG3 184 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms