RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 GOLGA6CA6NDK9 693 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 GOLGA6BA6NDN3 693 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 SMTNL1A8MU46 457 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 B4GAT1O43505 415 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 SOCS5O75159 536 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 CEACAM5P06731 702 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 JMJD7P0C870 316 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 GOLGA6DP0CG33 693 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 MYBL1P10243 752 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 RARAP10276 462 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 MYCLP1P12525 358 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 CTPS1P17812 591 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 AK4P27144 223 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 VIPR1P32241 457 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 ARL4AP40617 200 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 POLD2P49005 469 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 ZNF135P52742 658 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 EIF3IQ13347 325 aaKnown RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 ARHGEF7Q14155 803 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 FILIP1LQ4L180 1135 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 Q6ZVL8 140 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 CBARPQ8N350 705 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 GPBAR1Q8TDU6 330 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 TRIM11Q96F44 468 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 DTD2Q96FN9 168 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 CCNL2Q96S94 520 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 TEX101Q9BY14 249 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 FRMD8Q9BZ67 464 aaPredicted RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 THAP2Q9H0W7 228 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 SEMA6CQ9H3T2 930 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 RDH14Q9HBH5 336 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 PCDH18Q9HCL0 1135 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 MRPL47Q9HD33 250 aaKnown RBP11.63□□□□□ -0.55
USP3-220ENST00000561381 GOLGA6AQ9NYA3 693 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 ST14Q9Y5Y6 855 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 ZNF462Q96JM2 2506 aa11.63□□□□□ -0.55
USP3-220ENST00000561381 PRAMEF33A0A0G2JMD5 474 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 TMX2-CTNND1H3BSU7 103 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PDE2AO00408 941 aaPredicted RBP11.62□□□□□ -0.55
USP3-220ENST00000561381 NUDT21O43809 227 aaKnown RBP11.62□□□□□ -0.55
USP3-220ENST00000561381 PRAMEF10O60809 474 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PGLSO95336 258 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 FGF1P05230 155 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PDHA1P08559 390 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 CCNB1P14635 433 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PNLIPP16233 465 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 HSPA9P38646 679 aaKnown RBP11.62□□□□□ -0.55
USP3-220ENST00000561381 MMP13P45452 471 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 GNPDA1P46926 289 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 ZNF165P49910 485 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 OR1D5P58170 312 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 CDK3Q00526 305 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 B4GALNT1Q00973 533 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 SLC25A11Q02978 314 aaKnown RBP11.62□□□□□ -0.55
USP3-220ENST00000561381 NR1I3Q14994 352 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 AMZ1Q400G9 498 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 BOLA3Q53S33 107 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 HGSNATQ68CP4 663 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 RAET1GQ6H3X3 334 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 SLC30A9Q6PML9 568 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 CPNE8Q86YQ8 564 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 SLITRK4Q8IW52 837 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 ATPAF2Q8N5M1 289 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 ZDHHC1Q8WTX9 485 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PIH1D2Q8WWB5 315 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PATE1Q8WXA2 126 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 NT5MQ9NPB1 228 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PHPT1Q9NRX4 125 aaPredicted RBP11.62□□□□□ -0.55
USP3-220ENST00000561381 FOXJ2Q9P0K8 574 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 TAAR2Q9P1P5 351 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PHTF1Q9UMS5 762 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 SUFUQ9UMX1 484 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PLEKHM1Q9Y4G2 1056 aa11.62□□□□□ -0.55
USP3-220ENST00000561381 PYCARD-AS1I3L0S3 204 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 NVLO15381 856 aaKnown RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 ECEL1O95672 775 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 SOD1P00441 154 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 SERPINC1P01008 464 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 CD48P09326 243 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 CYP2A6P11509 494 aaPredicted RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 IL4RP24394 825 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 ALDH4A1P30038 563 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 MAPK10P53779 464 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 PIGHQ14442 188 aaPredicted RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 IHHQ14623 411 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 C16orf72Q14CZ0 275 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 IQCB1Q15051 598 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 TSR1Q2NL82 804 aaKnown RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 MAP9Q49MG5 647 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 TDRD12Q587J7 1177 aaKnown RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 PHF19Q5T6S3 580 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 MARC1Q5VT66 337 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 CAVIN1Q6NZI2 390 aaKnown RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 DOK6Q6PKX4 331 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 USP53Q70EK8 1073 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 TECPR1Q7Z6L1 1165 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 TRIM74Q86UV6 250 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 VASH2Q86V25 355 aa11.61□□□□□ -0.55
USP3-220ENST00000561381 C17orf82Q86X59 251 aaPredicted RBP11.61□□□□□ -0.55
USP3-220ENST00000561381 ZFAND4Q86XD8 727 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms