RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 KDELR1P24390 212 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 CCL7P80098 99 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 SLC10A2Q12908 348 aaPredicted RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 IHHQ14623 411 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 SOWAHCQ53LP3 525 aaPredicted RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 LRRC66Q68CR7 880 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 ALG1LQ6GMV1 187 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 SPACA3Q8IXA5 215 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 CCNYQ8ND76 341 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 ZNF248Q8NDW4 579 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 GRAMD1AQ96CP6 724 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 ZNF830Q96NB3 372 aaPredicted RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 TSGA13Q96PP4 275 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 RNF157Q96PX1 679 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 GFM1Q96RP9 751 aaKnown RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 TDRD1Q9BXT4 1180 aaKnown RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 TEX101Q9BY14 249 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 DPEP2Q9H4A9 486 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 ASCL3Q9NQ33 180 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 HAUS2Q9NVX0 235 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 DTLQ9NZJ0 730 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 CHKBQ9Y259 395 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 PTPRQQ9UMZ3 2332 aa16.31■□□□□ 0.2
VPS29-207ENST00000549970 ARHGEF17Q96PE2 2063 aaPredicted RBP16.31■□□□□ 0.2
VPS29-207ENST00000549970 A0A0J9YYE9 177 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 NOBOXO60393 691 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 TRBC1P01850 177 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 CEACAM5P06731 702 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 CES1P23141 567 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 RBMS1P29558 406 aaKnown RBP16.3■□□□□ 0.2
VPS29-207ENST00000549970 GPR1P46091 355 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 GNPDA1P46926 289 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 ERVPABLB-1P60509 514 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 NIPAL4Q0D2K0 466 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 DOK6Q6PKX4 331 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 TECPR1Q7Z6L1 1165 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 CCDC13Q8IYE1 715 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 Q8N9G6 341 aaPredicted RBP16.3■□□□□ 0.2
VPS29-207ENST00000549970 OR6C4Q8NGE1 309 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 ARRDC2Q8TBH0 407 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.3■□□□□ 0.2
VPS29-207ENST00000549970 FATE1Q969F0 183 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 AP2M1Q96CW1 435 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 HDAC11Q96DB2 347 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 HIC2Q96JB3 615 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 FRMD8Q9BZ67 464 aaPredicted RBP16.3■□□□□ 0.2
VPS29-207ENST00000549970 ABCG8Q9H221 673 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 THSD1Q9NS62 852 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 AMACRQ9UHK6 382 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 SUFUQ9UMX1 484 aa16.3■□□□□ 0.2
VPS29-207ENST00000549970 UNC13CQ8NB66 2214 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 A0A1W2PQM1 296 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 D6RAR5 112 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 KCNK1O00180 336 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 JCHAINP01591 159 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 FUCA1P04066 466 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 GLB1P16278 677 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 CA4P22748 312 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 POLD2P49005 469 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 PTSQ03393 145 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 TLE3Q04726 772 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 C14orf28Q4W4Y0 310 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 CERCAMQ5T4B2 595 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 OGFOD3Q6PK18 319 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 B3GNT8Q7Z7M8 397 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 CCNJLQ8IV13 435 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 RHOT2Q8IXI1 618 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 PLD5Q8N7P1 536 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 LPCAT1Q8NF37 534 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 WDR36Q8NI36 951 aaKnown RBP16.29■□□□□ 0.2
VPS29-207ENST00000549970 PTCD2Q8WV60 388 aaKnown RBP16.29■□□□□ 0.2
VPS29-207ENST00000549970 SCAMP4Q969E2 229 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 PRR11Q96HE9 360 aaPredicted RBP16.29■□□□□ 0.2
VPS29-207ENST00000549970 FCRL3Q96P31 734 aaPredicted RBP16.29■□□□□ 0.2
VPS29-207ENST00000549970 BBC3Q96PG8 261 aaPredicted RBP16.29■□□□□ 0.2
VPS29-207ENST00000549970 GSDMCQ9BYG8 508 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 FOXP3Q9BZS1 431 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 LRRN3Q9H3W5 708 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 PRORYQ9H606 182 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 EPB41L5Q9HCM4 733 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 PCDHGA8Q9Y5G5 932 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 HEY1Q9Y5J3 304 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 RNF215Q9Y6U7 377 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 IGSF10Q6WRI0 2623 aa16.29■□□□□ 0.2
VPS29-207ENST00000549970 CCDC187A0A096LP49 1063 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 CAPN8A6NHC0 703 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 SOD1P00441 154 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 KRT1P04264 644 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 TNNT1P13805 278 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 ZNF30P17039 623 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 AK4P27144 223 aaPredicted RBP16.28■□□□□ 0.2
VPS29-207ENST00000549970 TEAD1P28347 426 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 CD86P42081 329 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 ARHGAP25P42331 645 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 DPTQ07507 201 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 PPIDQ08752 370 aaKnown RBP16.28■□□□□ 0.2
VPS29-207ENST00000549970 ILF3Q12906 894 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS29-207ENST00000549970 HLTFQ14527 1009 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS29-207ENST00000549970 FAM182AQ5T1J6 154 aa16.28■□□□□ 0.2
VPS29-207ENST00000549970 SLC30A9Q6PML9 568 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms