RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PROSCO94903 275 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 TNFSF15O95150 251 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 SOD1P00441 154 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 ITGA2BP08514 1039 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 GLB1P16278 677 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 CTPS1P17812 591 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 MLLT3P42568 568 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 UCNP55089 124 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 TMPRSS3P57727 454 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 CDK3Q00526 305 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 HADHQ16836 314 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 TSR1Q2NL82 804 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 C14orf28Q4W4Y0 310 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 ANKRD20A8PQ5CZ79 823 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 RFLNAQ6ZTI6 216 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 USP45Q70EL2 814 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 SPRED1Q7Z699 444 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 TECPR1Q7Z6L1 1165 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 ARL14Q8N4G2 192 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 GPBAR1Q8TDU6 330 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 FAF2Q96CS3 445 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 ZNF670Q9BS34 389 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 XPO4Q9C0E2 1151 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 POLR1EQ9GZS1 481 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 CARS2Q9HA77 564 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 EPB41L5Q9HCM4 733 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 MOSPD1Q9UJG1 213 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 PDE2AO00408 941 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 MATN3O15232 486 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 PNLIPP16233 465 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 NFKBIAP25963 317 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 TEAD1P28347 426 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 CCKBRP32239 447 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 INHBCP55103 352 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 DPTQ07507 201 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 ZSCAN23Q3MJ62 389 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 BROXQ5VW32 411 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 PQLC3Q8N755 202 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 Q8N9G6 341 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC39A7Q92504 469 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 FATE1Q969F0 183 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 DPEP2Q9H4A9 486 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 SPATS2LQ9NUQ6 558 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 CTTNBP2NLQ9P2B4 639 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 UVRAGQ9P2Y5 699 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 ATXN7L1Q9ULK2 861 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 SUFUQ9UMX1 484 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC17A4Q9Y2C5 497 aa18.76■□□□□ 0.59
CCDC88B-206ENST00000473405 A0A0J9YYE9 177 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 EIF4E1BA6NMX2 242 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 TK2O00142 265 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 PLD2O14939 933 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 NUDT21O43809 227 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 TRBC1P01850 177 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 CCNB1P14635 433 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 DSC2Q02487 901 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 GBE1Q04446 702 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 EIF3IQ13347 325 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 ARHGEF7Q14155 803 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 SLC18A3Q16572 532 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 ASTE1Q2TB18 679 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 LRRC66Q68CR7 880 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 RAET1GQ6H3X3 334 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 RAB11FIP2Q7L804 512 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 TMPRSS9Q7Z410 1059 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 C17orf82Q86X59 251 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 KCTD6Q8NC69 237 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 LRRN4Q8WUT4 740 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 TSGA13Q96PP4 275 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 DNAJC7Q99615 494 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 TDRD1Q9BXT4 1180 aaKnown RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 SUDS3Q9H7L9 328 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 LRIT1Q9P2V4 623 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 CD84Q9UIB8 345 aa18.75■□□□□ 0.59
CCDC88B-206ENST00000473405 GOLGA6CA6NDK9 693 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 GOLGA6BA6NDN3 693 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 TMX2-CTNND1H3BSU7 103 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 FGF1P05230 155 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 HLA-DQB2P05538 268 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 GOLGA6DP0CG33 693 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 HGFP14210 728 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 UGT1A5P35504 534 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 GNPDA1P46926 289 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 POLD2P49005 469 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 MAZP56270 477 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 PTSQ03393 145 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 ZFP36L1Q07352 338 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 ITKQ08881 620 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 CLN3Q13286 438 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 PDK2Q15119 407 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 IFI16Q16666 785 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 ARHGAP40Q5TG30 622 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 TIGD7Q6NT04 549 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 LSM14AQ8ND56 463 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 ARRDC2Q8TBH0 407 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 KIAA1524Q8TCG1 905 aa18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 SNRNP27Q8WVK2 155 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 CTNNBL1Q8WYA6 563 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-206ENST00000473405 GSDMCQ9BYG8 508 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms