RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CTU1Q7Z7A3 348 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ADGRG6Q86SQ4 1221 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 LYSMD2Q8IV50 215 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 MAML2Q8IZL2 1156 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 CLEC4FQ8N1N0 589 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 SYNE4Q8N205 404 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ARFGAP1Q8N6T3 406 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 CELF5Q8N6W0 485 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 NAT16Q8N8M0 369 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PDZD8Q8NEN9 1154 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 TRPV3Q8NET8 790 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 NELFBQ8WX92 580 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 AUTS2Q8WXX7 1259 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DLG3Q92796 817 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 TOE1Q96GM8 510 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 HEXIM2Q96MH2 286 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PANX2Q96RD6 677 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 UHRF1Q96T88 793 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 CYTH2Q99418 400 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 SYT15Q9BQS2 421 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 SF3B5Q9BWJ5 86 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 C6orf62Q9GZU0 229 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DUSP15Q9H1R2 295 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 OR51B5Q9H339 312 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 WDR26Q9H7D7 661 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 L2HGDHQ9H9P8 463 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ZDHHC4Q9NPG8 344 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DCP1AQ9NPI6 582 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF275Q9NSD4 429 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 SAMSN1Q9NSI8 373 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 RCOR3Q9P2K3 495 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 DCDC2Q9UHG0 476 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNHIT2Q9UHR6 403 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 TMPRSS11EQ9UL52 423 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 NAALADL1Q9UQQ1 740 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 STXBP5LQ9Y2K9 1186 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 PCDHA3Q9Y5H8 950 aa4.83□□□□□ -1.64
CCDC88A-209ENST00000456975 hCG_1807616A0A1W2PRN6 198 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MTMR11A4FU01 709 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PRR23AA6NEV1 266 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 TMEM210A6NLX4 147 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 A8MXE2 369 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 C22orf46C9J442 243 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 HCRTR2O43614 444 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PDE5AO76074 875 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 FTLP02792 175 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KRT16P08779 473 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 FAM87AP0C7U9 286 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 STAG3L3P0CL85 134 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KITP10721 976 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 UMPSP11172 480 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CPN2P22792 545 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 AHCYP23526 432 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MAP4P27816 1152 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GSTM2P28161 218 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 EEF1DP29692 281 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ADSSP30520 456 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CASP4P49662 377 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 BCAR1P56945 870 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 XIAPP98170 497 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SPIRE1Q08AE8 756 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 RCN2Q14257 317 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GCKRQ14397 625 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SMU1Q2TAY7 513 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ANKRD20A4Q4UJ75 823 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CDKAL1Q5VV42 579 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CES4AQ5XG92 561 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 BLOC1S2Q6QNY1 142 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 RABEPKQ7Z6M1 372 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SH2D3CQ8N5H7 860 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GLIS1Q8NBF1 620 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 OR52N1Q8NH53 320 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 KCTD4Q8WVF5 259 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SEC14L1Q92503 715 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CPT1BQ92523 772 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SMG7Q92540 1137 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 MTFMTQ96DP5 389 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 HHIPL1Q96JK4 782 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ZSCAN31Q96LW9 406 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 OR1F2PQ96R84 312 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 VCXQ9H320 206 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 DPEP3Q9H4B8 488 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ACTR5Q9H9F9 607 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 VSX1Q9NZR4 365 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ORC3Q9UBD5 711 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 TRMT112Q9UI30 125 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PACSIN2Q9UNF0 486 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 HBS1LQ9Y450 684 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 SNX14Q9Y5W7 946 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CDHR2Q9BYE9 1310 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 UTYO14607 1347 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 ZNF98A6NK75 572 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 E7ENQ6 273 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GAS2O43903 313 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 GPRIN2O60269 458 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 PGLSO95336 258 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 OTCP00480 354 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 FUCA1P04066 466 aa4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CSTBP04080 98 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-209ENST00000456975 CELA3BP08861 270 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms