RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NDUFA10O95299 355 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 FUCA1P04066 466 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 TGM2P21980 687 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 PERM1Q5SV97 790 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 SPOCD1Q6ZMY3 1216 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 HEATR4Q86WZ0 1026 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 TMTC1Q8IUR5 882 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 NDUFAF2Q8N183 169 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 LPCAT1Q8NF37 534 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 ABCG8Q9H221 673 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 CYP4F12Q9HCS2 524 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 EVA1BQ9NVM1 165 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 KCTD5Q9NXV2 234 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 GULP1Q9UBP9 304 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 DOLKQ9UPQ8 538 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 REXO2Q9Y3B8 237 aaKnown RBP18.36■□□□□ 0.53
CLN3-202ENST00000355477 DUSP10Q9Y6W6 482 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 ADAMTS20P59510 1910 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 GOLGA6CA6NDK9 693 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 GOLGA6BA6NDN3 693 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 CAPN8A6NHC0 703 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 GOLGA6DP0CG33 693 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 MYCLP1P12525 358 aaPredicted RBP18.35■□□□□ 0.53
CLN3-202ENST00000355477 PECAM1P16284 738 aaPredicted RBP18.35■□□□□ 0.53
CLN3-202ENST00000355477 KELP23276 732 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 DPTQ07507 201 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 QPCTQ16769 361 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 KAZNQ674X7 775 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 LVRNQ6Q4G3 990 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 RAD9BQ6WBX8 426 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 KATNAL2Q8IYT4 538 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 SDR16C5Q8N3Y7 309 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 KYQ8NBH2 561 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 CCL4L1Q8NHW4 92 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 MAPK15Q8TD08 544 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 PTCD2Q8WV60 388 aaKnown RBP18.35■□□□□ 0.53
CLN3-202ENST00000355477 GLMNQ92990 594 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 SCAMP4Q969E2 229 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 AGAP3Q96P47 875 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 ANP32EQ9BTT0 268 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 TMEM168Q9H0V1 697 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 ABCG4Q9H172 646 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 PHPT1Q9NRX4 125 aaPredicted RBP18.35■□□□□ 0.53
CLN3-202ENST00000355477 GOLGA6AQ9NYA3 693 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 SEPT10Q9P0V9 454 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 SIRPGQ9P1W8 387 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 PADI4Q9UM07 663 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 GPR34Q9UPC5 381 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 RAXQ9Y2V3 346 aa18.35■□□□□ 0.53
CLN3-202ENST00000355477 PRSS38A1L453 326 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 PPP1R12AO14974 1030 aaPredicted RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 CST8O60676 142 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 CLDN7O95471 211 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 SOD1P00441 154 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 CEACAM5P06731 702 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 CA4P22748 312 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 RPIAP49247 311 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 STC1P52823 247 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 RPL26P61254 145 aaKnown RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 CDK3Q00526 305 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 RAET1GQ6H3X3 334 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 C11orf63Q6NUN7 778 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 DAAM2Q86T65 1068 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 GKN2Q86XP6 184 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 SFTPA2Q8IWL1 248 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 SCG3Q8WXD2 468 aaKnown RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 KRT35Q92764 455 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 IMP4Q96G21 291 aaKnown RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 FRMD8Q9BZ67 464 aaPredicted RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 NRSN2Q9GZP1 204 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 MOSPD1Q9UJG1 213 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 RPL26L1Q9UNX3 145 aaKnown RBP18.34■□□□□ 0.53
CLN3-202ENST00000355477 PCDHB1Q9Y5F3 818 aa18.34■□□□□ 0.53
CLN3-202ENST00000355477 hCG_1818297A0A087WSY0 165 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 ANKRD66B4E2M5 251 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 PDE2AO00408 941 aaPredicted RBP18.33■□□□□ 0.52
CLN3-202ENST00000355477 ZRANB2O95218 330 aaKnown RBP eCLIP18.33■□□□□ 0.52
CLN3-202ENST00000355477 ZNF30P17039 623 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 TEAD1P28347 426 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 POLD2P49005 469 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 NR2C2P49116 596 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 TFDP2Q14188 446 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 RTP5Q14D33 572 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 PRKD1Q15139 912 aaPredicted RBP18.33■□□□□ 0.52
CLN3-202ENST00000355477 TFDP3Q5H9I0 405 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 KDELC2Q7Z4H8 507 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 TAF8Q7Z7C8 310 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 RCOR2Q8IZ40 523 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 ARL10Q8N8L6 244 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 AP2M1Q96CW1 435 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 NXPE2Q96DL1 559 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 TRIB3Q96RU7 358 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 LYSMD1Q96S90 227 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 AGAP2Q99490 1192 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 LACRTQ9GZZ8 138 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 BRD8Q9H0E9 1235 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 LUC7LQ9NQ29 371 aaKnown RBP18.33■□□□□ 0.52
CLN3-202ENST00000355477 AK5Q9Y6K8 562 aa18.33■□□□□ 0.52
CLN3-202ENST00000355477 CSO75390 466 aaKnown RBP18.32■□□□□ 0.52
CLN3-202ENST00000355477 PTPN3P26045 913 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms