RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ALG11Q2TAA5 492 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TEX44Q53QW1 395 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 ESRP1Q6NXG1 681 aaKnown RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 NYAP1Q6ZVC0 841 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 Q6ZVL8 140 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 RAB44Q7Z6P3 723 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 NDUFAF2Q8N183 169 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 CBARPQ8N350 705 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 UBL4BQ8N7F7 174 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 OR4C6Q8NH72 309 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 ACTL9Q8TC94 416 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 ADAMTS14Q8WXS8 1223 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TADA1Q96BN2 335 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 APOOQ9BUR5 198 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TSGA10Q9BZW7 698 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 SLC25A51Q9H1U9 297 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TCEAL2Q9H3H9 227 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 GLOD4Q9HC38 313 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 APOBEC3BQ9UH17 382 aaKnown RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 EFR3BQ9Y2G0 817 aa13.73□□□□□ -0.21
SHMT2-219ENST00000555563 TDRD6O60522 2096 aaKnown RBP13.73□□□□□ -0.21
SHMT2-219ENST00000555563 MIF4GDA9UHW6 222 aaKnown RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 HACD1B0YJ81 288 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 K7ESM1 405 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 DDX3YO15523 660 aaKnown RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 MTSS1O43312 755 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 SIGLEC6O43699 453 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 DKK1O94907 266 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 MT-CYBP00156 380 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 C1SP09871 688 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 HTR1BP28222 390 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CD68P34810 354 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 ACADVLP49748 655 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 KIAA1024LP59773 190 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CCZ1BP86790 482 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CCZ1P86791 482 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 OTUD4Q01804 1114 aaKnown RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 PPARDQ03181 441 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 GALNT3Q14435 633 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 SLC14A2Q15849 920 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 PCSK7Q16549 785 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 QPCTQ16769 361 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 PROX2Q3B8N5 592 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CCDC157Q569K6 752 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 KCTD16Q68DU8 428 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CRTC1Q6UUV9 634 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 ENPP7Q6UWV6 458 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 RFLNAQ6ZTI6 216 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 LRRC8AQ8IWT6 810 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 CHCHD4Q8N4Q1 142 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 RNF10Q8N5U6 811 aaKnown RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 SPATA22Q8NHS9 363 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 HTR3CQ8WXA8 447 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 FUBP1Q96AE4 644 aaKnown RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 PDXPQ96GD0 296 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 TEKT5Q96M29 485 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 WDR92Q96MX6 357 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 TRIB3Q96RU7 358 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 FAM118BQ9BPY3 351 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 LRRC61Q9BV99 259 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 SCNM1Q9BWG6 230 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 SLC13A1Q9BZW2 595 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 WDR26Q9H7D7 661 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 GRPEL1Q9HAV7 217 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 NLGN3Q9NZ94 848 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 KLHL8Q9P2G9 620 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-219ENST00000555563 KLK13Q9UKR3 277 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 GUCA1BQ9UMX6 200 aa13.72□□□□□ -0.21
SHMT2-219ENST00000555563 F5H423 210 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-219ENST00000555563 H7C0C1 242 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 CACNB4O00305 520 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-219ENST00000555563 SCAMP1O15126 338 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 AQP9O43315 295 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 KRT86O43790 486 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 TSHRP16473 764 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 ZNF30P17039 623 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 NFKB1P19838 968 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 TRIM23P36406 574 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 CETN2P41208 172 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 ATP5OP48047 213 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 STC1P52823 247 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 XRCC4Q13426 336 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 PRRT3Q5FWE3 981 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 FAXCQ5TGI0 409 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 PNCKQ6P2M8 343 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 KDELC2Q7Z4H8 507 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 TECPR1Q7Z6L1 1165 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 HID1Q8IV36 788 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 ZNF567Q8N184 647 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 LMX1AQ8TE12 382 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 BTN2A2Q8WVV5 523 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 HES6Q96HZ4 224 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 LYSMD1Q96S90 227 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 LGR4Q9BXB1 951 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 ADGRE3Q9BY15 652 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 C10orf88Q9H8K7 445 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 FGF22Q9HCT0 170 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 UBP1Q9NZI7 540 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 KLQ9UEF7 1012 aa13.71□□□□□ -0.21
SHMT2-219ENST00000555563 CD84Q9UIB8 345 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms