RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 GOLGA6CA6NDK9 693 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 GOLGA6BA6NDN3 693 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 NPIPB15A6NHN6 443 aaPredicted RBP21.58■■□□□ 1.05
USP40-215ENST00000484528 AGRPO00253 132 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 ATXN7O15265 892 aaPredicted RBP21.58■■□□□ 1.05
USP40-215ENST00000484528 MFSD11O43934 449 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 HEXIM1O94992 359 aaKnown RBP21.58■■□□□ 1.05
USP40-215ENST00000484528 TNFSF15O95150 251 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 CYP1A2P05177 515 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 GOLGA6DP0CG33 693 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 CTPS1P17812 591 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 LHCGRP22888 699 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 TRIM23P36406 574 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 ETV3P41162 512 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 ZBED6P86452 979 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 IGF2-ASQ6U949 168 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 HSD11B1LQ7Z5J1 315 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 TSPAN33Q86UF1 283 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 HEATR4Q86WZ0 1026 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.58■■□□□ 1.05
USP40-215ENST00000484528 GPR156Q8NFN8 814 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 NT5MQ9NPB1 228 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 GOLGA6AQ9NYA3 693 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 PCDHGA8Q9Y5G5 932 aa21.58■■□□□ 1.05
USP40-215ENST00000484528 CFAP46Q8IYW2 2715 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 PRSS38A1L453 326 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 NOBOXO60393 691 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 MAP3K6O95382 1288 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 TMPRSS3P57727 454 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 CCDC122Q5T0U0 273 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 ARHGAP40Q5TG30 622 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 MARC1Q5VT66 337 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 ALKBH5Q6P6C2 394 aaKnown RBP21.57■■□□□ 1.04
USP40-215ENST00000484528 CCNJLQ8IV13 435 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 SMIM14Q96QK8 99 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 LRRN3Q9H3W5 708 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 CARS2Q9HA77 564 aaKnown RBP21.57■■□□□ 1.04
USP40-215ENST00000484528 IFNKQ9P0W0 207 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 CAPN11Q9UMQ6 739 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 PHTF1Q9UMS5 762 aa21.57■■□□□ 1.04
USP40-215ENST00000484528 TEX51A0A1B0GUA7 166 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 TNFRSF10CO14798 259 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 PGLSO95336 258 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 GYPCP04921 128 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 HOXC4P09017 264 aaPredicted RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 CYP2A6P11509 494 aaPredicted RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 MYCLP1P12525 358 aaPredicted RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 HGFP14210 728 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 IL4RP24394 825 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 ITKQ08881 620 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 ATP13A4Q4VNC1 1196 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 CERCAMQ5T4B2 595 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 SPECC1LQ69YQ0 1117 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 ARL14Q8N4G2 192 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 PTCD2Q8WV60 388 aaKnown RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 SPOCK2Q92563 424 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 DTD2Q96FN9 168 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 DPEP2Q9H4A9 486 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 PHPT1Q9NRX4 125 aaPredicted RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 ATXN7L1Q9ULK2 861 aaPredicted RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 LUC7L2Q9Y383 392 aaKnown RBP21.56■■□□□ 1.04
USP40-215ENST00000484528 RNF215Q9Y6U7 377 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 ATMQ13315 3056 aa21.56■■□□□ 1.04
USP40-215ENST00000484528 A0A1W2PQ67 120 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 CDRT15L2A8MXV6 281 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 GOLGA6L19H0YKK7 550 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 MYO1FO00160 1098 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 INHBCP55103 352 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 C14orf28Q4W4Y0 310 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 ARMC12Q5T9G4 340 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 Q6ZVL8 140 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 OR6C4Q8NGE1 309 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 ZNF564Q8TBZ8 553 aaPredicted RBP21.55■■□□□ 1.04
USP40-215ENST00000484528 LRRN4Q8WUT4 740 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 LIN37Q96GY3 246 aaPredicted RBP21.55■■□□□ 1.04
USP40-215ENST00000484528 SEMA3CQ99985 751 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 WDR70Q9NW82 654 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 CD84Q9UIB8 345 aa21.55■■□□□ 1.04
USP40-215ENST00000484528 PDE2AO00408 941 aaPredicted RBP21.54■■□□□ 1.04
USP40-215ENST00000484528 PLD2O14939 933 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 C1QL1O75973 258 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 FUCA1P04066 466 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 PDHA1P08559 390 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 CASP14P31944 242 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 UCNP55089 124 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 SKOR1P84550 965 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 ARHGEF7Q14155 803 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 DPYSL3Q14195 570 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 HADHQ16836 314 aaKnown RBP21.54■■□□□ 1.04
USP40-215ENST00000484528 NCBP2-AS2Q69YL0 99 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 RAET1GQ6H3X3 334 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 OGFOD3Q6PK18 319 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 DOK6Q6PKX4 331 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 PCSK4Q6UW60 755 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 RFLNAQ6ZTI6 216 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 USP45Q70EL2 814 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 RAB11FIP2Q7L804 512 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 JAMLQ86YT9 394 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 FBXO39Q8N4B4 442 aa21.54■■□□□ 1.04
USP40-215ENST00000484528 SCRN2Q96FV2 425 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms