RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MDGA1Q8NFP4 955 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 OR6P1Q8NGX9 317 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 ZNF669Q96BR6 464 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 WRAP53Q9BUR4 548 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 C1QTNF1Q9BXJ1 281 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SYBUQ9NX95 663 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 FBXO4Q9UKT5 387 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 RAB21Q9UL25 225 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 RIMKLBQ9ULI2 386 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CHMP2BQ9UQN3 213 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 FADS3Q9Y5Q0 445 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 UQCRHLA0A096LP55 91 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 ANTXRLA6NF34 631 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 NPIPB15A6NHN6 443 aaPredicted RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 E7ESA3 106 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 CLDN7O95471 211 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 PRKCGP05129 697 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 UQCRHP07919 91 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 HOXA6P31267 233 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 STX2P32856 288 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 DRD3P35462 400 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 SPAM1P38567 509 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 MAGEA3P43357 314 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 LIG3P49916 1009 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 PMS2P54278 862 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 ADPRHP54922 357 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 CSTF1Q05048 431 aaKnown RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 ILF2Q12905 390 aaKnown RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 ITGA9Q13797 1035 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 GAS6Q14393 721 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 TRADDQ15628 312 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 LONRF1Q17RB8 773 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 KCTD19Q17RG1 926 aaPredicted RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 SETMARQ53H47 684 aaPredicted RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 LRRC73Q5JTD7 316 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 AARS2Q5JTZ9 985 aaKnown RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 TSTD2Q5T7W7 516 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 PIP5KL1Q5T9C9 394 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 AGBL4Q5VU57 503 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 DENND5AQ6IQ26 1287 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 CRTC1Q6UUV9 634 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 RASSF3Q86WH2 238 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 LMNTD2Q8IXW0 634 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 UBLCP1Q8WVY7 318 aaPredicted RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 KIFC1Q9BW19 673 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 TPSD1Q9BZJ3 242 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 PCED1AQ9H1Q7 454 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 SLC6A17Q9H1V8 727 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 EPC1Q9H2F5 836 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 ARFGAP3Q9NP61 516 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 CHRAC1Q9NRG0 131 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 NSMCE4AQ9NXX6 385 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 USP36Q9P275 1121 aaKnown RBP10.1□□□□□ -0.79
CD44-207ENST00000425428 VPS9D1Q9Y2B5 631 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 ARL5AQ9Y689 179 aa10.1□□□□□ -0.79
CD44-207ENST00000425428 BHMG1C9JSJ3 638 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 PI15O43692 258 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 RNGTTO60942 597 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 RPP40O75818 363 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 CHRM1P11229 460 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 ITGALP20701 1170 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 PMLP29590 882 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 CRADDP78560 199 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MTM1Q13496 603 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MAP7D1Q3KQU3 841 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 FASTKD1Q53R41 847 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 HP1BP3Q5SSJ5 553 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 PDPK2PQ6A1A2 396 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MRNIPQ6NTE8 343 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 AFTPHQ6ULP2 937 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 LIPIQ6XZB0 460 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 C3orf62Q6ZUJ4 267 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 TMC3Q7Z5M5 1100 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 HORMAD1Q86X24 394 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 ZSWIM9Q86XI8 627 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 RELL1Q8IUW5 271 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 OR4K2Q8NGD2 314 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 GSDMBQ8TAX9 411 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 FOXJ1Q92949 421 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 NUS1Q96E22 293 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 TOE1Q96GM8 510 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 SIGLEC10Q96LC7 697 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 PLEKHG4BQ96PX9 1271 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 RUFY1Q96T51 708 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 FAM83DQ9H4H8 585 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 NLE1Q9NVX2 485 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 FNDC3AQ9Y2H6 1198 aaKnown RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 TEX264Q9Y6I9 313 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 A0A087WUV0 522 aaPredicted RBP10.09□□□□□ -0.79
CD44-207ENST00000425428 GLYATL1P3A0A0U1RQE8 302 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MROH6A6NGR9 719 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 GOLGA8CPA6NN73 597 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MEI4A8MW99 385 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 PLK4O00444 970 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 AREL1O15033 823 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 MMP20O60882 483 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 IGLV3-19P01714 112 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 IVLP07476 585 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 C6P13671 934 aa10.09□□□□□ -0.79
CD44-207ENST00000425428 AKT2P31751 481 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms