RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SPRP35270 261 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 SERPINB9P50453 376 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ZNF140P52738 457 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 METAP1P53582 386 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RPL26P61254 145 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 POLR2LP62875 67 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 GRM3Q14832 879 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 PON2Q15165 354 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 UGP2Q16851 508 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ZRANB3Q5FWF4 1079 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ZNF789Q5FWF6 425 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 TNFAIP8L3Q5GJ75 292 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 GRTP1Q5TC63 336 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 LRRC66Q68CR7 880 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 PTCRAQ6ISU1 281 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 FAM151BQ6UXP7 276 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 KDM7AQ6ZMT4 941 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 TAS2R42Q7RTR8 314 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CMC1Q7Z7K0 106 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MMAAQ8IVH4 418 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 OR4L1Q8NH43 312 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 GABPB2Q8TAK5 448 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 GDAP1Q8TB36 358 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CALML6Q8TD86 181 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 DYDC1Q8WWB3 177 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 OR8D1Q8WZ84 308 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 FAM136AQ96C01 138 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 EID2BQ96D98 161 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 VPS39Q96JC1 886 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ZNF641Q96N77 438 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 FAM167BQ9BTA0 163 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 C12orf65Q9H3J6 166 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 FAM96AQ9H5X1 160 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MAGEE1Q9HCI5 957 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 NKIRAS1Q9NYS0 192 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 HACD3Q9P035 362 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MARCH4Q9P2E8 410 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 ZNF180Q9UJW8 692 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 FBXO5Q9UKT4 447 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 SARDHQ9UL12 918 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 PHTF1Q9UMS5 762 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RPL26L1Q9UNX3 145 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 CRYL1Q9Y2S2 319 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MTO1Q9Y2Z2 717 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 UBA6A0AVT1 1052 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 CAPN8A6NHC0 703 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 C16orf96A6NNT2 1141 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 TPP1O14773 563 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 SLC7A4O43246 635 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 SYNCRIPO60506 623 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 TOP3BO95985 862 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 GABRB3P28472 473 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MC4RP32245 332 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RPA3P35244 121 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 HMGCLP35914 325 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 GMPRP36959 345 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 EIF2DP41214 584 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 CDKN1CP49918 316 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 NAB1Q13506 487 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ARHGEF7Q14155 803 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MPP2Q14168 576 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ELAVL3Q14576 367 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 RASA2Q15283 850 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 FASTKD1Q53R41 847 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 PPM1JQ5JR12 505 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 C9orf64Q5T6V5 341 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 IER5LQ5T953 404 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MRNIPQ6NTE8 343 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 BRAT1Q6PJG6 821 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CNSTQ6PJW8 725 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CRTC1Q6UUV9 634 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RAPH1Q70E73 1250 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CILP2Q8IUL8 1156 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 PLCD3Q8N3E9 789 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 DCLK2Q8N568 766 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ACVR1CQ8NER5 493 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MZB1Q8WU39 189 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 PBXIP1Q96AQ6 731 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 VOPP1Q96AW1 172 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 ECHDC3Q96DC8 303 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 SCRN2Q96FV2 425 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 NDNQ99608 321 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RBBP8Q99708 897 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CAPS2Q9BXY5 557 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 IQCGQ9H095 443 aaKnown RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 ABCG8Q9H221 673 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 VPS11Q9H270 941 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 MFSD1Q9H3U5 465 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 RABEP2Q9H5N1 569 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CATSPERZQ9NTU4 200 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 NLE1Q9NVX2 485 aaPredicted RBP3.71□□□□□ -1.82
RTN4-208ENST00000404909 SENP1Q9P0U3 644 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 B4GALT6Q9UBX8 382 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 CD84Q9UIB8 345 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 HCN2Q9UL51 889 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 KNL1Q8NG31 2342 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 FAM47DPA6NHR8 397 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 K7EQS6 105 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 NEMP1O14524 444 aa3.71□□□□□ -1.82
RTN4-208ENST00000404909 COPEO14579 308 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms