RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GGA2Q9UJY4 613 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 A0A1W2PQ67 120 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 HNRNPA1P09651 372 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIG4-202ENST00000405925 CTSEP14091 401 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PKMP14618 531 aaKnown RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 TSPAN8P19075 237 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 SLC8A1P32418 973 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 SERPINB5P36952 375 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 SPAM1P38567 509 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 ATXN3P54252 364 aaPredicted RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 KCNK10P57789 538 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PIK3R6Q5UE93 754 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PM20D1Q6GTS8 502 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PAQR9Q6ZVX9 377 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 MPP5Q8N3R9 675 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 GSTCDQ8NEC7 633 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 OR2AP1Q8NGE2 309 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 BRSK1Q8TDC3 778 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 AZIN2Q96A70 460 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 TIFAQ96CG3 184 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 HERPUD2Q9BSE4 406 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 OSBPL7Q9BZF2 842 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 NOD2Q9HC29 1040 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 TBC1D30Q9Y2I9 924 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 URB1O60287 2271 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 SLCO1B7G3V0H7 640 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 MYO1CO00159 1063 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 KRT6AP02538 564 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 KRT6BP04259 564 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 PCNAP12004 261 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 IGFBP6P24592 240 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 TARSP26639 723 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 KRT6CP48668 564 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 FAM189BP81408 668 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 ELP6Q0PNE2 266 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 NAA25Q14CX7 972 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 XKR4Q5GH76 650 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SLC8B1Q6J4K2 584 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 DCAF4L2Q8NA75 395 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 OR13C4Q8NGS5 318 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 LINGO1Q96FE5 620 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 FEM1CQ96JP0 617 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SFXN1Q9H9B4 322 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SEMA4BQ9NPR2 832 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 DZANK1Q9NVP4 752 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 OPTCQ9UBM4 332 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 TBX21Q9UL17 535 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 NDUFS2O75306 463 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SH3BGRLO75368 114 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 ASLP04424 464 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 ANXA5P08758 320 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 ATP5F1P24539 256 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 GRK3P35626 688 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 CCNHP51946 323 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 BST1Q10588 318 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 PLEKHG6Q3KR16 790 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 KIAA0319Q5VV43 1072 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 PDE12Q6L8Q7 609 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 MTDHQ86UE4 582 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 SUGP1Q8IWZ8 645 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 TP53INP2Q8IXH6 220 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 OR56A4Q8NGH8 313 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SLC26A7Q8TE54 656 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 IRF7Q92985 503 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 C1orf74Q96LT6 269 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 TCF7L2Q9NQB0 619 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 PCDH10Q9P2E7 1040 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 VPS51Q9UID3 782 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 FTH1P02794 183 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 TCN1P20061 433 aaPredicted RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 SERINC3Q13530 473 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SPDYE7PQ495Y7 208 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 CARD16Q5EG05 197 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 CKAP2Q8WWK9 683 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 ZFYVE19Q96K21 471 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 AGAP2Q99490 1192 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 HGH1Q9BTY7 390 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 MECRQ9BV79 373 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 TRIM15Q9C019 465 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SUV39H2Q9H5I1 410 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 MRPL40Q9NQ50 206 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 MRGBPQ9NV56 204 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 HCFC1R1Q9NWW0 138 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 MARCH5Q9NX47 278 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 SLC17A7Q9P2U7 560 aa9.11□□□□□ -0.95
LIG4-202ENST00000405925 EIF3LQ9Y262 564 aaKnown RBP9.11□□□□□ -0.95
LIG4-202ENST00000405925 OR51F1A6NGY5 319 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SEC24AO95486 1093 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 GOT2P00505 430 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 ALPIP09923 528 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 HTR1BP28222 390 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 TIE1P35590 1138 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 VIPR2P41587 438 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 SKIV2L2P42285 1042 aaKnown RBP9.1□□□□□ -0.95
LIG4-202ENST00000405925 MAPK9P45984 424 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 UBE3AQ05086 875 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 ABRQ12979 859 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 UBXN2BQ14CS0 331 aa9.1□□□□□ -0.95
LIG4-202ENST00000405925 PPM1JQ5JR12 505 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms