RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PSMD5Q16401 504 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 SLC5A9Q2M3M2 681 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 METTL25Q8N6Q8 603 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 C3orf58Q8NDZ4 430 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 SPPL2BQ8TCT7 592 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 RNF34Q969K3 372 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 TOP1MTQ969P6 601 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 SGF29Q96ES7 293 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 CNBD2Q96M20 576 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 MEAF6Q9HAF1 191 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 MRPL40Q9NQ50 206 aaKnown RBP16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 CHST12Q9NRB3 414 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM105AQ9NUU6 356 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 PTTG2Q9NZH5 202 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 PHF24Q9UPV7 400 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 MKI67P46013 3256 aaKnown RBP16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 NEMP2A6NFY4 417 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 CLCNKBP51801 687 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 ATXN3P54252 364 aaPredicted RBP16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 GK3PQ14409 553 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 MAPRE2Q15555 327 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 C6orf52Q5T4I8 152 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 MANEALQ5VSG8 457 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 ARMC3Q5W041 872 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 KIAA0408Q6ZU52 694 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 SLC43A3Q8NBI5 491 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM156AQ8NDB6 213 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 DEFB118Q96PH6 123 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 RBM38Q9H0Z9 239 aaKnown RBP16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 EPS15L1Q9UBC2 864 aa16.51■□□□□ 0.23
CLCNKA-203ENST00000439316 TRIM24O15164 1050 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 FGF10O15520 208 aaPredicted RBP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 HLA-DQB2P05538 268 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM58BPP0C7Q3 252 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 SPATA31D3P0C874 917 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 HNRNPLP14866 589 aaKnown RBP eCLIP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 PCSK1P29120 753 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 HTR7P34969 479 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 LRP8Q14114 963 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 NADK2Q4G0N4 442 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 ARTNQ5T4W7 220 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 BTBD8Q5XKL5 378 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 RBM44Q6ZP01 1051 aaKnown RBP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 SPATA31D4Q6ZUB0 917 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 BEND5Q7L4P6 421 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 LZTR1Q8N653 840 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 NMD3Q96D46 503 aaKnown RBP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 CCDC126Q96EE4 140 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 MRGPRX2Q96LB1 330 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 RTP3Q9BQQ7 232 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 PRKD2Q9BZL6 878 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 PAK6Q9NQU5 681 aaPredicted RBP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 WBP1LQ9NX94 342 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 ADA2Q9NZK5 511 aa16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 NYNRINQ9P2P1 1898 aaKnown RBP16.5■□□□□ 0.23
CLCNKA-203ENST00000439316 A8MT66 165 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 H0YJX3 145 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 ARVCFO00192 962 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 AURKAO14965 403 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 IRAK2O43187 625 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CKBP12277 381 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 ZNF26P17031 533 aaPredicted RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 TCN1P20061 433 aaPredicted RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CHRNA4P43681 627 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 SLC12A2P55011 1212 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 INHBCP55103 352 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 STX5Q13190 355 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 MAP7Q14244 749 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 TRIM25Q14258 630 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CSHL1Q14406 222 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM26DQ5JW98 314 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 RBM20Q5T481 1227 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 IL23RQ5VWK5 629 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 REP15Q6BDI9 236 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 ZNF280DQ6N043 979 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 RANBP10Q6VN20 620 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 AFAP1L2Q8N4X5 818 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 GAD1Q99259 594 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 FSD1LQ9BXM9 530 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 SLC39A8Q9C0K1 460 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 SIK2Q9H0K1 926 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 TNFRSF12AQ9NP84 129 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CACNA2D2Q9NY47 1150 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 APPL1Q9UKG1 709 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 PADI4Q9UM07 663 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 E7ENX8 843 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 FBP2O00757 339 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 MGEA5O60502 916 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 PMPCBO75439 489 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 KCNA5P22460 613 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 AFF1P51825 1210 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 PDAP1Q13442 181 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM83EQ2M2I3 478 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 MGAT5BQ3V5L5 792 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 BRMS1LQ5PSV4 323 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 NEPROQ6NW34 567 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CHERPQ8IWX8 916 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 GALNT4Q8N4A0 578 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 PCDH20Q8N6Y1 951 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 LPPQ93052 612 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms