RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PREPLQ4J6C6 727 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 PABPC1LQ4VXU2 614 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 FAM45BPQ6NSW5 357 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 EPGNQ6UW88 154 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 TAS1R1Q7RTX1 841 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SDCCAG8Q86SQ7 713 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ITIH5Q86UX2 942 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ALYREFQ86V81 257 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CILP2Q8IUL8 1156 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CMTR2Q8IYT2 770 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SLC25A41Q8N5S1 370 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ENDOVQ8N8Q3 282 aaKnown RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 FAM45AQ8TCE6 357 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 TMEM169Q96HH4 297 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ELMO2Q96JJ3 720 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SCYL1Q96KG9 808 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CNDP1Q96KN2 507 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 NUDCD1Q96RS6 583 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CDX2Q99626 313 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SEMA3CQ99985 751 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 C19orf43Q9BQ61 176 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 PBX4Q9BYU1 374 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF576Q9H609 170 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CAB39LQ9H9S4 337 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 SLC28A3Q9HAS3 691 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 NCKIPSDQ9NZQ3 722 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CXXC1Q9P0U4 656 aaPredicted RBP13.66□□□□□ -0.22
LIMS1-205ENST00000410093 TBC1D30Q9Y2I9 924 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 ASB3Q9Y575 518 aa13.66□□□□□ -0.22
LIMS1-205ENST00000410093 CXorf51AA0A1B0GTR3 108 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TYW5A2RUC4 315 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 GRXCR1A8MXD5 290 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 NT5C1B-RDH14C9J2C7 533 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 F8W8V4 182 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 ZNF195O14628 629 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 BAIAP3O94812 1187 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 GLP2RO95838 553 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 HMGA1P17096 107 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 ATP5F1P24539 256 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 ELF1P32519 619 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 IDH3AP50213 366 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 RPL14P50914 215 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 IRF9Q00978 393 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TUBB3Q13509 450 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 ACAP2Q15057 778 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 SH2D4BQ5SQS7 431 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TMEM173Q86WV6 379 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 SLC41A1Q8IVJ1 513 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 DENND6AQ8IWF6 608 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TCEAL8Q8IYN2 117 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 CENPLQ8N0S6 344 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 SLC39A11Q8N1S5 342 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 FSTL5Q8N475 847 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TMEM151AQ8N4L1 468 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 BCL7CQ8WUZ0 217 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 USP13Q92995 863 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TOP1MTQ969P6 601 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 GUCD1Q96NT3 240 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 KLHL5Q96PQ7 755 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TCF12Q99081 682 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 CLSTN3Q9BQT9 956 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TRMOQ9BU70 441 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 CCDC28BQ9BUN5 200 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 CINPQ9BW66 212 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 GATA5Q9BWX5 397 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 CADM1Q9BY67 442 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 EBF2Q9HAK2 575 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 RNPEPL1Q9HAU8 725 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 EML4Q9HC35 981 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 INTS10Q9NVR2 710 aaKnown RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 TAS2R1Q9NYW7 299 aa13.65□□□□□ -0.22
LIMS1-205ENST00000410093 MARCOQ9UEW3 520 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-205ENST00000410093 B2RBV5 119 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 HDAC3O15379 428 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 COCHO43405 550 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 LDB2O43679 373 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 RPP40O75818 363 aaKnown RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 STC2O76061 302 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 LTA4HP09960 611 aaKnown RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 FOSL2P15408 326 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 PFKLP17858 780 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 PPM1AP35813 382 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 CHRNA4P43681 627 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 KCNQ1P51787 676 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 EPHB3P54753 998 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 MPP1Q00013 466 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 DLG2Q15700 870 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 IL31Q6EBC2 164 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 DDX53Q86TM3 631 aaKnown RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 METTL3Q86U44 580 aaKnown RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 MFN1Q8IWA4 741 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 PGBD5Q8N414 524 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 TDRD5Q8NAT2 981 aaKnown RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 OR13J1Q8NGT2 312 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 PHOSPHO2Q8TCD6 241 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 AGAP11Q8TF27 550 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 ZNF689Q96CS4 500 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-205ENST00000410093 GPR78Q96P69 363 aa13.64□□□□□ -0.23
LIMS1-205ENST00000410093 ASB2Q96Q27 587 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms