RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 SPATA31A3Q5VYP0 1347 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 B4GALNT3Q6L9W6 998 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 UNC5CLQ8IV45 518 aa9.29□□□□□ -0.92
MSH6-209ENST00000538136 FRAT2O75474 233 aaPredicted RBP9.28□□□□□ -0.92
MSH6-209ENST00000538136 RIC3Q7Z5B4 369 aa9.28□□□□□ -0.92
MSH6-209ENST00000538136 AK7Q96M32 723 aa9.28□□□□□ -0.92
MSH6-209ENST00000538136 ADAMTS13Q76LX8 1427 aa9.27□□□□□ -0.92
MSH6-209ENST00000538136 PLEKHG3A1L390 1219 aa9.27□□□□□ -0.92
MSH6-209ENST00000538136 ZBTB7AO95365 584 aa9.27□□□□□ -0.92
MSH6-209ENST00000538136 POTEAQ6S8J7 498 aa9.27□□□□□ -0.92
MSH6-209ENST00000538136 MTHFSDQ2M296 383 aaKnown RBP9.27□□□□□ -0.93
MSH6-209ENST00000538136 AMER1Q5JTC6 1135 aaPredicted RBP9.27□□□□□ -0.93
MSH6-209ENST00000538136 ITPRIPQ8IWB1 547 aa9.27□□□□□ -0.93
MSH6-209ENST00000538136 IFNL2Q8IZJ0 200 aa9.27□□□□□ -0.93
MSH6-209ENST00000538136 HDGFL1Q5TGJ6 251 aa9.27□□□□□ -0.93
MSH6-209ENST00000538136 IP6K1Q92551 441 aa9.27□□□□□ -0.93
MSH6-209ENST00000538136 GJD4Q96KN9 370 aaPredicted RBP9.27□□□□□ -0.93
MSH6-209ENST00000538136 KDM5CP41229 1560 aa9.27□□□□□ -0.93
MSH6-209ENST00000538136 GAS2L2Q8NHY3 880 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 ATP5J2-PTCD1G3V325 749 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 GTF3C3Q9Y5Q9 886 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 ARHGAP31Q2M1Z3 1444 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 GNAT3A8MTJ3 354 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 EXOSC9Q06265 439 aaKnown RBP9.26□□□□□ -0.93
MSH6-209ENST00000538136 RUNDC1Q96C34 613 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 GNPATO15228 680 aa9.26□□□□□ -0.93
MSH6-209ENST00000538136 R3HDM1Q15032 1099 aaKnown RBP9.26□□□□□ -0.93
MSH6-209ENST00000538136 CCNL1Q9UK58 526 aaPredicted RBP9.26□□□□□ -0.93
MSH6-209ENST00000538136 CEP170BQ9Y4F5 1589 aaPredicted RBP9.26□□□□□ -0.93
MSH6-209ENST00000538136 PTPRTO14522 1441 aa9.25□□□□□ -0.93
MSH6-209ENST00000538136 BAG6P46379 1132 aa9.25□□□□□ -0.93
MSH6-209ENST00000538136 ARHGEF25Q86VW2 580 aa9.25□□□□□ -0.93
MSH6-209ENST00000538136 ZNF526Q8TF50 670 aaPredicted RBP9.25□□□□□ -0.93
MSH6-209ENST00000538136 ASAP1Q9ULH1 1129 aa9.25□□□□□ -0.93
MSH6-209ENST00000538136 DCAF8L1A6NGE4 600 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 RBM6P78332 1123 aaKnown RBP9.24□□□□□ -0.93
MSH6-209ENST00000538136 TMX4Q9H1E5 349 aaPredicted RBP9.24□□□□□ -0.93
MSH6-209ENST00000538136 FER1L4A9Z1Z3 1794 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 PPRC1Q5VV67 1664 aaKnown RBP9.24□□□□□ -0.93
MSH6-209ENST00000538136 JCADQ9P266 1359 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 KCNQ3O43525 872 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 C9orf78Q9NZ63 289 aaPredicted RBP9.24□□□□□ -0.93
MSH6-209ENST00000538136 TTC21AQ8NDW8 1320 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 SLC4A2P04920 1241 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 RGS3P49796 1198 aa9.24□□□□□ -0.93
MSH6-209ENST00000538136 F6X3S4 739 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 ZPR1O75312 459 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 RFC4P35249 363 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 SPINK5Q9NQ38 1064 aaPredicted RBP9.23□□□□□ -0.93
MSH6-209ENST00000538136 INO80Q9ULG1 1556 aaPredicted RBP9.23□□□□□ -0.93
MSH6-209ENST00000538136 C1orf167Q5SNV9 1468 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 TMPOP42166 694 aaKnown RBP9.23□□□□□ -0.93
MSH6-209ENST00000538136 PTF1AQ7RTS3 328 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 ZNF622Q969S3 477 aaKnown RBP eCLIP9.23□□□□□ -0.937e-14■■■□□ 18.5
MSH6-209ENST00000538136 RICTORQ6R327 1708 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 PIK3C2GO75747 1445 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 A1BGP04217 495 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 ANKRD36BQ8N2N9 1353 aa9.23□□□□□ -0.93
MSH6-209ENST00000538136 LMOD3Q0VAK6 560 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 PIK3C2BO00750 1634 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 CLTCL1P53675 1640 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 SIRT1Q96EB6 747 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 MYH16Q9H6N6 1097 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 ARHGEF10O15013 1369 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 AGLP35573 1532 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 GRM1Q13255 1194 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 CCDC136Q96JN2 1154 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 C1orf115Q9H7X2 142 aa9.22□□□□□ -0.93
MSH6-209ENST00000538136 RNF17Q9BXT8 1623 aaKnown RBP9.22□□□□□ -0.93
MSH6-209ENST00000538136 NBPF14Q5TI25 921 aa9.21□□□□□ -0.93
MSH6-209ENST00000538136 DNAJC10Q8IXB1 793 aa9.21□□□□□ -0.93
MSH6-209ENST00000538136 ISY1Q9ULR0 285 aaKnown RBP9.21□□□□□ -0.93
MSH6-209ENST00000538136 COG6Q9Y2V7 657 aa9.21□□□□□ -0.93
MSH6-209ENST00000538136 GORABQ5T7V8 394 aa9.2□□□□□ -0.94
MSH6-209ENST00000538136 SIL1Q9H173 461 aa9.2□□□□□ -0.94
MSH6-209ENST00000538136 PRAMEF22A3QJZ6 481 aa9.2□□□□□ -0.94
MSH6-209ENST00000538136 TWISTNBQ3B726 338 aaPredicted RBP9.2□□□□□ -0.94
MSH6-209ENST00000538136 TRPM2O94759 1503 aa9.2□□□□□ -0.94
MSH6-209ENST00000538136 GOLGB1Q14789 3259 aaKnown RBP9.2□□□□□ -0.94
MSH6-209ENST00000538136 STARD3NLO95772 234 aa9.2□□□□□ -0.94
MSH6-209ENST00000538136 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.2□□□□□ -0.94
MSH6-209ENST00000538136 ADGBQ8N7X0 1667 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 PER1O15534 1290 aaPredicted RBP9.19□□□□□ -0.94
MSH6-209ENST00000538136 NEXNQ0ZGT2 675 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 BCAR3O75815 825 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 FCHSD2O94868 740 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 NFE2L2Q16236 605 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 ERBB3P21860 1342 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 CALD1Q05682 793 aaKnown RBP9.19□□□□□ -0.94
MSH6-209ENST00000538136 FAM196AQ6ZSG2 479 aa9.19□□□□□ -0.94
MSH6-209ENST00000538136 ECM2O94769 699 aaPredicted RBP9.18□□□□□ -0.94
MSH6-209ENST00000538136 EZH2Q15910 746 aaKnown RBP9.18□□□□□ -0.94
MSH6-209ENST00000538136 DUSP27Q5VZP5 1158 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 CHMP4CQ96CF2 233 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 STK32BQ9NY57 414 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 FLT4P35916 1363 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 ZMYM4Q5VZL5 1548 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 ALKQ9UM73 1620 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 PANK1Q8TE04 598 aa9.18□□□□□ -0.94
MSH6-209ENST00000538136 PNISRQ8TF01 805 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms