RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 ALDH1L2Q3SY69 923 aa14.59□□□□□ -0.07
RFC4-214ENST00000494047 BRINP3Q76B58 766 aa14.59□□□□□ -0.07
RFC4-214ENST00000494047 MED1Q15648 1581 aaPredicted RBP14.58□□□□□ -0.08
RFC4-214ENST00000494047 HDAC1Q13547 482 aaPredicted RBP14.58□□□□□ -0.08
RFC4-214ENST00000494047 DZIP1LQ8IYY4 767 aaKnown RBP14.58□□□□□ -0.08
RFC4-214ENST00000494047 JCADQ9P266 1359 aa14.57□□□□□ -0.08
RFC4-214ENST00000494047 SRPK2P78362 688 aaKnown RBP14.57□□□□□ -0.08
RFC4-214ENST00000494047 GSE1Q14687 1217 aa14.57□□□□□ -0.08
RFC4-214ENST00000494047 COG6Q9Y2V7 657 aa14.57□□□□□ -0.08
RFC4-214ENST00000494047 C1orf167Q5SNV9 1468 aa14.56□□□□□ -0.08
RFC4-214ENST00000494047 FCHSD2O94868 740 aa14.56□□□□□ -0.08
RFC4-214ENST00000494047 NFKBIBQ15653 356 aa14.56□□□□□ -0.08
RFC4-214ENST00000494047 FRAT1Q92837 279 aaPredicted RBP14.56□□□□□ -0.08
RFC4-214ENST00000494047 LAS1LQ9Y4W2 734 aaKnown RBP14.56□□□□□ -0.08
RFC4-214ENST00000494047 COL16A1Q07092 1604 aaPredicted RBP14.55□□□□□ -0.08
RFC4-214ENST00000494047 LMOD3Q0VAK6 560 aa14.55□□□□□ -0.08
RFC4-214ENST00000494047 WAPLQ7Z5K2 1190 aa14.55□□□□□ -0.08
RFC4-214ENST00000494047 POGKQ9P215 609 aa14.55□□□□□ -0.08
RFC4-214ENST00000494047 CDK12Q9NYV4 1490 aaPredicted RBP14.55□□□□□ -0.08
RFC4-214ENST00000494047 DIAPH1O60610 1272 aaKnown RBP14.54□□□□□ -0.08
RFC4-214ENST00000494047 NHSL1Q5SYE7 1610 aa14.54□□□□□ -0.08
RFC4-214ENST00000494047 EDC4Q6P2E9 1401 aaKnown RBP14.54□□□□□ -0.08
RFC4-214ENST00000494047 SPATA31A6Q5VVP1 1343 aa14.54□□□□□ -0.08
RFC4-214ENST00000494047 CD163L1Q9NR16 1453 aa14.53□□□□□ -0.08
RFC4-214ENST00000494047 TMPOP42166 694 aaKnown RBP14.53□□□□□ -0.08
RFC4-214ENST00000494047 PANK1Q8TE04 598 aa14.53□□□□□ -0.08
RFC4-214ENST00000494047 LRRC59Q96AG4 307 aaKnown RBP14.53□□□□□ -0.08
RFC4-214ENST00000494047 AATKQ6ZMQ8 1374 aa14.52□□□□□ -0.08
RFC4-214ENST00000494047 IGHDP01880 384 aa14.52□□□□□ -0.08
RFC4-214ENST00000494047 ATF7IPQ6VMQ6 1270 aa14.52□□□□□ -0.08
RFC4-214ENST00000494047 PLEKHF1Q96S99 279 aa14.52□□□□□ -0.08
RFC4-214ENST00000494047 SMC4Q9NTJ3 1288 aa14.52□□□□□ -0.08
RFC4-214ENST00000494047 KIF24Q5T7B8 1368 aa14.51□□□□□ -0.09
RFC4-214ENST00000494047 ARHGAP45Q92619 1136 aa14.51□□□□□ -0.09
RFC4-214ENST00000494047 TBC1D32Q96NH3 1257 aa14.51□□□□□ -0.09
RFC4-214ENST00000494047 PRAM1Q96QH2 718 aa14.51□□□□□ -0.09
RFC4-214ENST00000494047 NEUROD2Q15784 382 aa14.5□□□□□ -0.09
RFC4-214ENST00000494047 MON2Q7Z3U7 1717 aa14.5□□□□□ -0.09
RFC4-214ENST00000494047 PTMSP20962 102 aa14.49□□□□□ -0.09
RFC4-214ENST00000494047 CABP2Q9NPB3 220 aa14.49□□□□□ -0.09
RFC4-214ENST00000494047 NPHP3Q7Z494 1330 aa14.49□□□□□ -0.09
RFC4-214ENST00000494047 FMN2Q9NZ56 1722 aa14.49□□□□□ -0.09
RFC4-214ENST00000494047 FYB1O15117 783 aa14.48□□□□□ -0.09
RFC4-214ENST00000494047 TNNT2P45379 298 aaPredicted RBP14.48□□□□□ -0.09
RFC4-214ENST00000494047 ESCO1Q5FWF5 840 aa14.48□□□□□ -0.09
RFC4-214ENST00000494047 ORAI2Q96SN7 254 aa14.48□□□□□ -0.09
RFC4-214ENST00000494047 ITSN1Q15811 1721 aa14.48□□□□□ -0.09
RFC4-214ENST00000494047 SOS2Q07890 1332 aaPredicted RBP14.48□□□□□ -0.09
RFC4-214ENST00000494047 U2SURPO15042 1029 aaKnown RBP14.47□□□□□ -0.09
RFC4-214ENST00000494047 L1TD1Q5T7N2 865 aaKnown RBP14.47□□□□□ -0.09
RFC4-214ENST00000494047 SMC5Q8IY18 1101 aa14.47□□□□□ -0.09
RFC4-214ENST00000494047 PDZRN3Q9UPQ7 1066 aa14.47□□□□□ -0.09
RFC4-214ENST00000494047 RRP7AQ9Y3A4 280 aaKnown RBP14.47□□□□□ -0.09
RFC4-214ENST00000494047 GNAI1P63096 354 aa14.47□□□□□ -0.09
RFC4-214ENST00000494047 GCC1Q96CN9 775 aa14.47□□□□□ -0.09
RFC4-214ENST00000494047 USP19O94966 1318 aa14.46□□□□□ -0.09
RFC4-214ENST00000494047 KIF1AQ12756 1690 aa14.46□□□□□ -0.09
RFC4-214ENST00000494047 AKAP12Q02952 1782 aa14.46□□□□□ -0.09
RFC4-214ENST00000494047 IFT57Q9NWB7 429 aa14.46□□□□□ -0.1
RFC4-214ENST00000494047 ISY1Q9ULR0 285 aaKnown RBP14.46□□□□□ -0.1
RFC4-214ENST00000494047 CPSF1Q10570 1443 aaKnown RBP14.45□□□□□ -0.1
RFC4-214ENST00000494047 ANKARQ7Z5J8 1434 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 NRKQ7Z2Y5 1582 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 TRIM27P14373 513 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 RIPK4P57078 832 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 SAFB2Q14151 953 aaKnown RBP eCLIP14.45□□□□□ -0.1
RFC4-214ENST00000494047 TRIM35Q9UPQ4 493 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 PCDHB15Q9Y5E8 787 aa14.45□□□□□ -0.1
RFC4-214ENST00000494047 EXOSC9Q06265 439 aaKnown RBP14.44□□□□□ -0.1
RFC4-214ENST00000494047 ITPRIPQ8IWB1 547 aa14.44□□□□□ -0.1
RFC4-214ENST00000494047 CDK19Q9BWU1 502 aa14.44□□□□□ -0.1
RFC4-214ENST00000494047 MAP2P11137 1827 aaKnown RBP14.43□□□□□ -0.1
RFC4-214ENST00000494047 RLBP1P12271 317 aa14.43□□□□□ -0.1
RFC4-214ENST00000494047 ZNF692Q9BU19 519 aaPredicted RBP14.43□□□□□ -0.1
RFC4-214ENST00000494047 MINK1Q8N4C8 1332 aaPredicted RBP14.42□□□□□ -0.1
RFC4-214ENST00000494047 WASLO00401 505 aaPredicted RBP14.42□□□□□ -0.1
RFC4-214ENST00000494047 FOXO3O43524 673 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 NFE2L2Q16236 605 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 MEX3CQ5U5Q3 659 aaKnown RBP14.42□□□□□ -0.1
RFC4-214ENST00000494047 SSH1Q8WYL5 1049 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 DDX17Q92841 729 aaKnown RBP14.42□□□□□ -0.1
RFC4-214ENST00000494047 GGNBP2Q9H3C7 697 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 ZBTB40Q9NUA8 1239 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 PHF8Q9UPP1 1060 aa14.42□□□□□ -0.1
RFC4-214ENST00000494047 NUTM2FA1L443 756 aa14.41□□□□□ -0.1
RFC4-214ENST00000494047 PSME1Q06323 249 aa14.41□□□□□ -0.1
RFC4-214ENST00000494047 API5Q9BZZ5 524 aaKnown RBP14.41□□□□□ -0.1
RFC4-214ENST00000494047 CIZ1Q9ULV3 898 aaPredicted RBP14.41□□□□□ -0.1
RFC4-214ENST00000494047 PXDNQ92626 1479 aa14.4□□□□□ -0.1
RFC4-214ENST00000494047 ZNF772Q68DY9 489 aaPredicted RBP14.4□□□□□ -0.1
RFC4-214ENST00000494047 HSCBQ8IWL3 235 aa14.4□□□□□ -0.1
RFC4-214ENST00000494047 RSPH6AQ9H0K4 717 aa14.4□□□□□ -0.1
RFC4-214ENST00000494047 RGPD8O14715 1765 aaPredicted RBP14.4□□□□□ -0.1
RFC4-214ENST00000494047 DDX11L8A8MPP1 907 aa14.39□□□□□ -0.11
RFC4-214ENST00000494047 BMP2KLQ5H9B9 411 aa14.39□□□□□ -0.11
RFC4-214ENST00000494047 IL27Q8NEV9 243 aa14.39□□□□□ -0.11
RFC4-214ENST00000494047 C22orf23Q9BZE7 217 aa14.39□□□□□ -0.11
RFC4-214ENST00000494047 CHMP5Q9NZZ3 219 aa14.39□□□□□ -0.11
RFC4-214ENST00000494047 LRP6O75581 1613 aa14.38□□□□□ -0.11
RFC4-214ENST00000494047 COL22A1Q8NFW1 1626 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms