RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 NME9Q86XW9 330 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 NGDNQ8NEJ9 315 aaKnown RBP12.22□□□□□ -0.45
COL6A3-204ENST00000392003 SSH1Q8WYL5 1049 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 ATF7IPQ6VMQ6 1270 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 SIRT1Q96EB6 747 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 USP35Q9P2H5 1018 aa12.22□□□□□ -0.45
COL6A3-204ENST00000392003 C14orf37Q86TY3 774 aa12.21□□□□□ -0.45
COL6A3-204ENST00000392003 ZNF692Q9BU19 519 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-204ENST00000392003 HMOX1P09601 288 aa12.21□□□□□ -0.45
COL6A3-204ENST00000392003 HAP1P54257 671 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-204ENST00000392003 PDZRN3Q9UPQ7 1066 aa12.21□□□□□ -0.45
COL6A3-204ENST00000392003 NFE2L2Q16236 605 aa12.21□□□□□ -0.46
COL6A3-204ENST00000392003 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-204ENST00000392003 TRIM27P14373 513 aa12.2□□□□□ -0.46
COL6A3-204ENST00000392003 LMOD3Q0VAK6 560 aa12.2□□□□□ -0.46
COL6A3-204ENST00000392003 NOB1Q9ULX3 412 aaKnown RBP12.2□□□□□ -0.46
COL6A3-204ENST00000392003 EMILIN1Q9Y6C2 1016 aa12.2□□□□□ -0.46
COL6A3-204ENST00000392003 ZNF428Q96B54 188 aa12.2□□□□□ -0.46
COL6A3-204ENST00000392003 FAM135BQ49AJ0 1406 aa12.2□□□□□ -0.46
COL6A3-204ENST00000392003 HSP90AA2PQ14568 343 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-204ENST00000392003 ALDH1L2Q3SY69 923 aa12.19□□□□□ -0.46
COL6A3-204ENST00000392003 SLC4A3P48751 1232 aa12.19□□□□□ -0.46
COL6A3-204ENST00000392003 GNAI1P63096 354 aa12.18□□□□□ -0.46
COL6A3-204ENST00000392003 BECN1Q14457 450 aa12.18□□□□□ -0.46
COL6A3-204ENST00000392003 ANKLE2Q86XL3 938 aa12.18□□□□□ -0.46
COL6A3-204ENST00000392003 ZRANB1Q9UGI0 708 aa12.18□□□□□ -0.46
COL6A3-204ENST00000392003 TBX22Q9Y458 520 aa12.18□□□□□ -0.46
COL6A3-204ENST00000392003 CPSF1Q10570 1443 aaKnown RBP12.18□□□□□ -0.46
COL6A3-204ENST00000392003 PLEKHG1Q9ULL1 1385 aa12.17□□□□□ -0.46
COL6A3-204ENST00000392003 RRS1Q15050 365 aaKnown RBP12.17□□□□□ -0.46
COL6A3-204ENST00000392003 ROBO2Q9HCK4 1378 aa12.17□□□□□ -0.46
COL6A3-204ENST00000392003 AATKQ6ZMQ8 1374 aa12.17□□□□□ -0.46
COL6A3-204ENST00000392003 LRRC7Q96NW7 1537 aa12.17□□□□□ -0.46
COL6A3-204ENST00000392003 SETD1AO15047 1707 aaKnown RBP12.16□□□□□ -0.46
COL6A3-204ENST00000392003 CDC42BPGQ6DT37 1551 aa12.16□□□□□ -0.46
COL6A3-204ENST00000392003 IL13P35225 146 aa12.16□□□□□ -0.46
COL6A3-204ENST00000392003 TMEM57Q8N5G2 664 aa12.16□□□□□ -0.46
COL6A3-204ENST00000392003 CDK12Q9NYV4 1490 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-204ENST00000392003 TECPR2O15040 1411 aa12.15□□□□□ -0.46
COL6A3-204ENST00000392003 MAP2P11137 1827 aaKnown RBP12.15□□□□□ -0.46
COL6A3-204ENST00000392003 ACEP12821 1306 aa12.15□□□□□ -0.46
COL6A3-204ENST00000392003 GTF2E1P29083 439 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-204ENST00000392003 PHACTR3Q96KR7 559 aa12.15□□□□□ -0.46
COL6A3-204ENST00000392003 IFT57Q9NWB7 429 aa12.15□□□□□ -0.46
COL6A3-204ENST00000392003 HDAC1Q13547 482 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-204ENST00000392003 NAP1L5Q96NT1 182 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-204ENST00000392003 NRXN3Q9Y4C0 1643 aa12.14□□□□□ -0.47
COL6A3-204ENST00000392003 THUMPD2Q9BTF0 503 aaKnown RBP12.14□□□□□ -0.47
COL6A3-204ENST00000392003 PRDM4Q9UKN5 801 aa12.13□□□□□ -0.47
COL6A3-204ENST00000392003 PRR36Q9H6K5 1346 aa12.13□□□□□ -0.47
COL6A3-204ENST00000392003 KCNA6P17658 529 aa12.13□□□□□ -0.47
COL6A3-204ENST00000392003 RBM33Q96EV2 1170 aaKnown RBP12.13□□□□□ -0.47
COL6A3-204ENST00000392003 KNDC1Q76NI1 1749 aa12.13□□□□□ -0.47
COL6A3-204ENST00000392003 SAMD1Q6SPF0 538 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-204ENST00000392003 TTC21BQ7Z4L5 1316 aa12.12□□□□□ -0.47
COL6A3-204ENST00000392003 ADAMTS13Q76LX8 1427 aa12.12□□□□□ -0.47
COL6A3-204ENST00000392003 CPS1P31327 1500 aa12.12□□□□□ -0.47
COL6A3-204ENST00000392003 TULP1O00294 542 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-204ENST00000392003 ELL2O00472 640 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-204ENST00000392003 ZBTB40Q9NUA8 1239 aa12.12□□□□□ -0.47
COL6A3-204ENST00000392003 ZBTB7CA1YPR0 619 aa12.11□□□□□ -0.47
COL6A3-204ENST00000392003 BRPF1P55201 1214 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-204ENST00000392003 ARHGAP45Q92619 1136 aa12.11□□□□□ -0.47
COL6A3-204ENST00000392003 VAMP4O75379 141 aa12.11□□□□□ -0.47
COL6A3-204ENST00000392003 SEC24BO95487 1268 aa12.11□□□□□ -0.47
COL6A3-204ENST00000392003 AMPHP49418 695 aa12.11□□□□□ -0.47
COL6A3-204ENST00000392003 TWISTNBQ3B726 338 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-204ENST00000392003 NFKBIBQ15653 356 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 NUTM2GQ5VZR2 741 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 CFAP44Q96MT7 982 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 MBIPQ9NS73 344 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 VIRMAQ69YN4 1812 aaKnown RBP12.1□□□□□ -0.47
COL6A3-204ENST00000392003 ITSN1Q15811 1721 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 NLRP6P59044 892 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 SMC5Q8IY18 1101 aa12.1□□□□□ -0.47
COL6A3-204ENST00000392003 API5Q9BZZ5 524 aaKnown RBP12.1□□□□□ -0.47
COL6A3-204ENST00000392003 PLEKHG3A1L390 1219 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 SULT6B1Q6IMI4 303 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 LMOD2Q6P5Q4 547 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 MRPL50Q8N5N7 158 aaKnown RBP12.09□□□□□ -0.47
COL6A3-204ENST00000392003 MON2Q7Z3U7 1717 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 UBR1Q8IWV7 1749 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 PLCD3Q8N3E9 789 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 USP19O94966 1318 aa12.09□□□□□ -0.47
COL6A3-204ENST00000392003 ZNF853P0CG23 659 aa12.08□□□□□ -0.48
COL6A3-204ENST00000392003 TSPYL6Q8N831 410 aa12.08□□□□□ -0.48
COL6A3-204ENST00000392003 EIF4A2Q14240 407 aaKnown RBP12.07□□□□□ -0.48
COL6A3-204ENST00000392003 TBC1D32Q96NH3 1257 aa12.07□□□□□ -0.48
COL6A3-204ENST00000392003 ABTB2Q8N961 1025 aa12.07□□□□□ -0.48
COL6A3-204ENST00000392003 AKAP12Q02952 1782 aa12.07□□□□□ -0.48
COL6A3-204ENST00000392003 MFAP1P55081 439 aaKnown RBP12.06□□□□□ -0.48
COL6A3-204ENST00000392003 FAM83GA6ND36 823 aa12.06□□□□□ -0.48
COL6A3-204ENST00000392003 PSME1Q06323 249 aa12.06□□□□□ -0.48
COL6A3-204ENST00000392003 DCTN1Q14203 1278 aa12.06□□□□□ -0.48
COL6A3-204ENST00000392003 GCC1Q96CN9 775 aa12.06□□□□□ -0.48
COL6A3-204ENST00000392003 LTV1Q96GA3 475 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-204ENST00000392003 ZFP91Q96JP5 570 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-204ENST00000392003 LNPKQ9C0E8 428 aa12.06□□□□□ -0.48
COL6A3-204ENST00000392003 BRD2P25440 801 aaKnown RBP12.06□□□□□ -0.48
COL6A3-204ENST00000392003 ESCO1Q5FWF5 840 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms