RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 ZNF235Q14590 738 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 IHHQ14623 411 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 GRM3Q14832 879 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 SPA17Q15506 151 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 UGP2Q16851 508 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 N4BP2L1Q5TBK1 243 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 C11orf63Q6NUN7 778 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 MFSD7Q6UXD7 560 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 ABI3BPQ7Z7G0 1075 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 TTC7BQ86TV6 843 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 NAXDQ8IW45 347 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 RHOT1Q8IXI2 618 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 SLC22A18ASQ8N1D0 253 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 TEX26Q8N6G2 289 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 OR13H1Q8NG92 308 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 TPCN2Q8NHX9 752 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 BAHD1Q8TBE0 780 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 HCAR2Q8TDS4 363 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 MAML1Q92585 1016 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 RNF25Q96BH1 459 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 FEM1CQ96JP0 617 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 BMFQ96LC9 184 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 TSGA13Q96PP4 275 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 NUDCD1Q96RS6 583 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 ELF4Q99607 663 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 BAG1Q99933 345 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 LACRTQ9GZZ8 138 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 ATP13A3Q9H7F0 1226 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 CAAP1Q9H8G2 361 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 PCDH12Q9NPG4 1184 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 GPR27Q9NS67 375 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 IMPACTQ9P2X3 320 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 PCDHGB2Q9Y5G2 931 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 USP24Q9UPU5 2620 aa11.09□□□□□ -0.63
SHKBP1-206ENST00000595523 SCN8AQ9UQD0 1980 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 SPAARA0A1B0GVQ0 90 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 POM121BA6NF01 834 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 NEMP1O14524 444 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 RIOK3O14730 519 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 PJA2O43164 708 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 HTRA2O43464 458 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 PSTPIP1O43586 416 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 SPOPO43791 374 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 PCDHGA12O60330 932 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 MMP20O60882 483 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 TNNT1P13805 278 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 SERPINA4P29622 427 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 AKT2P31751 481 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 HSPA9P38646 679 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 MMP12P39900 470 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 CDKN2BP42772 138 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 MMP13P45452 471 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 CCT8P50990 548 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 AP1S1P61966 158 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 FOXK2Q01167 660 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 SEMG2Q02383 582 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 BCL2L1Q07817 233 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 TRAF2Q12933 501 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 RALGDSQ12967 914 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 STAT4Q14765 748 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 TAZQ16635 292 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 IFI16Q16666 785 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 TMEM52BQ4KMG9 183 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 FAM182AQ5T1J6 154 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 ZFYVE27Q5T4F4 411 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 MARC1Q5VT66 337 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 ALG1LQ6GMV1 187 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 BRAT1Q6PJG6 821 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 NPNTQ6UXI9 565 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 LRRC49Q8IUZ0 686 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 ASB12Q8WXK4 309 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 SPOCK2Q92563 424 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 KRT35Q92764 455 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 FATE1Q969F0 183 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 HDAC11Q96DB2 347 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 LENG8Q96PV6 779 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 WRAP53Q9BUR4 548 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 NOD2Q9HC29 1040 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 NT5MQ9NPB1 228 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 GDF3Q9NR23 364 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 PCOLCE2Q9UKZ9 415 aa11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 ZFC3H1O60293 1989 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-206ENST00000595523 MYLKQ15746 1914 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 ARHGEF17Q96PE2 2063 aaPredicted RBP11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 ASXL3Q9C0F0 2248 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 BTNL10A8MVZ5 291 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 MATN3O15232 486 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 THEGLP0DJG4 465 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 CCNCP24863 283 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 IGFALSP35858 605 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 SUOXP51687 545 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 VAV2P52735 878 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 ADCY2Q08462 1091 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 ELP6Q0PNE2 266 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 OVGP1Q12889 678 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 HNRNPDQ14103 355 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 SLC45A4Q5BKX6 768 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 TPRG1LQ5T0D9 272 aa11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 KYAT3Q6YP21 454 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-206ENST00000595523 KANSL1Q7Z3B3 1105 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms