RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PDHA1P08559 390 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 PTPN2P17706 415 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CDC25CP30307 473 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 ITFG1Q8TB96 612 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 ZNF473Q8WTR7 871 aaKnown RBP16.69■□□□□ 0.26
USP4-201ENST00000265560 TTC17Q96AE7 1141 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 SUDS3Q9H7L9 328 aaPredicted RBP16.69■□□□□ 0.26
USP4-201ENST00000265560 FGFR1OP2Q9NVK5 253 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 TXNDC16Q9P2K2 825 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 SOX13Q9UN79 622 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 LZTS1Q9Y250 596 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 TBC1D30Q9Y2I9 924 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 ILVBLA1L0T0 632 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CARNS1A5YM72 827 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 OR51F1A6NGY5 319 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 HGSO14964 777 aaPredicted RBP16.69■□□□□ 0.26
USP4-201ENST00000265560 SMAD6O43541 496 aaKnown RBP16.69■□□□□ 0.26
USP4-201ENST00000265560 KDELR3O43731 214 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 RFPL1O75677 317 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CD70P32970 193 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 NRIP1P48552 1158 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 MGAT5Q09328 741 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CYTH1Q15438 398 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 NAT16Q8N8M0 369 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CDKL2Q92772 493 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 USP13Q92995 863 aaPredicted RBP16.69■□□□□ 0.26
USP4-201ENST00000265560 EPOPA6NHQ4 379 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 GOLGA8CPA6NN73 597 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 LUC7L3O95232 432 aaKnown RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 PDE1BQ01064 536 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 MPP3Q13368 585 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 SPANXN3Q5MJ09 141 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 PKN3Q6P5Z2 889 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 BANPQ8N9N5 519 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 IFT43Q96FT9 208 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 PIDD1Q9HB75 910 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 SLCO1B3Q9NPD5 702 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 FETUBQ9UGM5 382 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 FAM237BA0A1B0GVD1 139 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 USP1O94782 785 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 HNRNPH2P55795 449 aaKnown RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 NR1H3Q13133 447 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 DNAJC3Q13217 504 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 SEPT7Q16181 437 aaKnown RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 TEDDM1Q5T9Z0 273 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 HHATQ5VTY9 493 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 C16orf46Q6P387 395 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 NDUFAF2Q8N183 169 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 CHMP6Q96FZ7 201 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 ZNF317Q96PQ6 595 aaPredicted RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 TGS1Q96RS0 853 aaKnown RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 UNKQ9C0B0 810 aaKnown RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 ZNF358Q9NW07 568 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 VPS51Q9UID3 782 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 ARL5AQ9Y689 179 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 TPP1O14773 563 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 AURKAO14965 403 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 SLC8A1P32418 973 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 MPP1Q00013 466 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 PCID2Q5JVF3 399 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 GPR65Q8IYL9 337 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 HJURPQ8NCD3 748 aaPredicted RBP16.68■□□□□ 0.26
USP4-201ENST00000265560 DENND1AQ8TEH3 1009 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 NAT9Q9BTE0 207 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 MECRQ9BV79 373 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 PBX4Q9BYU1 374 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 NKX2-4Q9H2Z4 354 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 WNT6Q9Y6F9 365 aa16.68■□□□□ 0.26
USP4-201ENST00000265560 KRT38O76015 456 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 TMCC1O94876 653 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ALDOAP04075 364 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 ITGA2BP08514 1039 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 CEBPBP17676 345 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ARNTP27540 789 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 CTSOP43234 321 aaPredicted RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 SERPINH1P50454 418 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 SLC7A9P82251 487 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 SH2D5Q6ZV89 423 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 RMDN1Q96DB5 314 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ELAC2Q9BQ52 826 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 MTO1Q9Y2Z2 717 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 VCANP13611 3396 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 TYW5A2RUC4 315 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 NEDD8-MDP1E9PL57 170 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 INSIG1O15503 277 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ASMTLO95671 621 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 STK19P49842 368 aaPredicted RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 SETD3Q86TU7 594 aaPredicted RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 ARID3BQ8IVW6 561 aaPredicted RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 PPHLN1Q8NEY8 458 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 SRPK1Q96SB4 655 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 DDX50Q9BQ39 737 aaKnown RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 KIFC1Q9BW19 673 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ACE2Q9BYF1 805 aaPredicted RBP16.67■□□□□ 0.26
USP4-201ENST00000265560 TNKS2Q9H2K2 1166 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 TLE6Q9H808 572 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 TCAF1Q9Y4C2 921 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 ACTL7BQ9Y614 415 aa16.67■□□□□ 0.26
USP4-201ENST00000265560 DNAJC6O75061 913 aa16.66■□□□□ 0.26
USP4-201ENST00000265560 SERPINF2P08697 491 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms