RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 OR2AP1Q8NGE2 309 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 NAP1L5Q96NT1 182 aaPredicted RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 CALN1Q9BXU9 219 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 HAUS4Q9H6D7 363 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 NOL6Q9H6R4 1146 aaKnown RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 FADS3Q9Y5Q0 445 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 A0A1B0GTH6 734 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 FAM149AA5PLN7 773 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 SRRM3A6NNA2 597 aaPredicted RBP16.6■□□□□ 0.25
VPS29-207ENST00000549970 KRIT1O00522 736 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 TMCC1O94876 653 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 GSRP00390 522 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 UGT2B4P06133 528 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 PSMA2P25787 234 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 AIF1P55008 147 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 RPS21P63220 83 aaKnown RBP16.6■□□□□ 0.25
VPS29-207ENST00000549970 MAMLD1Q13495 774 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 TMEM259Q4ZIN3 620 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 ATXN7L2Q5T6C5 722 aaPredicted RBP16.6■□□□□ 0.25
VPS29-207ENST00000549970 SFMBT2Q5VUG0 894 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 E4F1Q66K89 784 aaPredicted RBP16.6■□□□□ 0.25
VPS29-207ENST00000549970 KIAA1161Q6NSJ0 714 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 PPP1R2P3Q6NXS1 205 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 GCNT7Q6ZNI0 430 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 GALNT15Q8N3T1 639 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 HMCESQ96FZ2 354 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 VCPIP1Q96JH7 1222 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 FEM1CQ96JP0 617 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 KLC2Q9H0B6 622 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 CATSPERBQ9H7T0 1116 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 PARVAQ9NVD7 372 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 GPATCH2LQ9NWQ4 482 aa16.6■□□□□ 0.25
VPS29-207ENST00000549970 TDRD6O60522 2096 aaKnown RBP16.59■□□□□ 0.25
VPS29-207ENST00000549970 A0A1W2PQC6 194 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ZSCAN5CA6NGD5 496 aaPredicted RBP16.59■□□□□ 0.25
VPS29-207ENST00000549970 C16orf96A6NNT2 1141 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 RASA4BC9J798 803 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 RASA4O43374 803 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 SERPINC1P01008 464 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ABL2P42684 1182 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 TPI1P60174 286 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 FGL2Q14314 439 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 MYLK3Q32MK0 819 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ZNF805Q5CZA5 627 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 KANSL1Q7Z3B3 1105 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ZNF571Q7Z3V5 609 aaPredicted RBP16.59■□□□□ 0.25
VPS29-207ENST00000549970 PTAR1Q7Z6K3 402 aaPredicted RBP16.59■□□□□ 0.25
VPS29-207ENST00000549970 OR13H1Q8NG92 308 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 LRIG1Q96JA1 1093 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 KLHL32Q96NJ5 620 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 FUCA2Q9BTY2 467 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 SLC17A9Q9BYT1 436 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ITM2BQ9Y287 266 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 ARID1BQ8NFD5 2236 aaPredicted RBP16.59■□□□□ 0.25
VPS29-207ENST00000549970 LAMA5O15230 3695 aa16.59■□□□□ 0.25
VPS29-207ENST00000549970 CELSR3Q9NYQ7 3312 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 WASH4PA8MWX3 477 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 TAF4O00268 1085 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 NEMP1O14524 444 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 AP1G1O43747 822 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 POP4O95707 220 aaKnown RBP16.58■□□□□ 0.24
VPS29-207ENST00000549970 PAK4O96013 591 aaPredicted RBP16.58■□□□□ 0.24
VPS29-207ENST00000549970 YBEYP58557 167 aaPredicted RBP16.58■□□□□ 0.24
VPS29-207ENST00000549970 RHOAP61586 193 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 IQCB1Q15051 598 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 SMAD1Q15797 465 aaKnown RBP16.58■□□□□ 0.24
VPS29-207ENST00000549970 PLEKHA7Q6IQ23 1121 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 MDM1Q8TC05 714 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 GDAP1L1Q96MZ0 367 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 OSBPL1AQ9BXW6 950 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 CCDC86Q9H6F5 360 aaKnown RBP16.58■□□□□ 0.24
VPS29-207ENST00000549970 CAAP1Q9H8G2 361 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 AIPL1Q9NZN9 384 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 GGT7Q9UJ14 662 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 AP4E1Q9UPM8 1137 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 PCDHGA1Q9Y5H4 931 aa16.58■□□□□ 0.24
VPS29-207ENST00000549970 SYCE3A1L190 88 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 IGLON5A6NGN9 336 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 A6NNZ2 444 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 DDX3XO00571 662 aaKnown RBP eCLIP16.57■□□□□ 0.241e-8■■□□□ 11.8
VPS29-207ENST00000549970 RAD51BO15315 384 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 FGF10O15520 208 aaPredicted RBP16.57■□□□□ 0.24
VPS29-207ENST00000549970 RFPL3O75679 317 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 IGSF6O95976 241 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 FTLP02792 175 aaPredicted RBP16.57■□□□□ 0.24
VPS29-207ENST00000549970 CAPNS1P04632 268 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 SKILP12757 684 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 PRKCIP41743 596 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 ACADVLP49748 655 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 CLDN6P56747 220 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 RAD51Q06609 339 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 KLHL30Q0D2K2 578 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 SERINC3Q13530 473 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 CA9Q16790 459 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 PARP15Q460N3 678 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 LRRC73Q5JTD7 316 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 GDPD4Q6W3E5 623 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 Q6ZSR6 202 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 ABI3BPQ7Z7G0 1075 aa16.57■□□□□ 0.24
VPS29-207ENST00000549970 PROSER1Q86XN7 944 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms