RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GANCQ8TET4 914 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 UBE2Q2Q8WVN8 375 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 PSKH2Q96QS6 385 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 PHOX2BQ99453 314 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 NT5MQ9NPB1 228 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 FBXL12Q9NXK8 326 aa12.94□□□□□ -0.34
SS18-202ENST00000269138 APOC4-APOC2K7ER74 178 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 KPNA3O00505 521 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 ZNF217O75362 1048 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 TJP3O95049 919 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 ADH1BP00325 375 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 JCHAINP01591 159 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 APOC2P02655 101 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 PRNPP04156 253 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 C5AR1P21730 350 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CXCR5P32302 372 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 DRD3P35462 400 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 MMP13P45452 471 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 SCNN1BP51168 640 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CNTN1Q12860 1018 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 ZBTB17Q13105 803 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 KLF1Q13351 362 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 HNRNPDQ14103 355 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 ZNF235Q14590 738 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 PRKD1Q15139 912 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 LPAL2Q16609 132 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 TIGD7Q6NT04 549 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 ADAT2Q7Z6V5 191 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 KBTBD6Q86V97 674 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 HDDC3Q8N4P3 179 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 DEFB119Q8N690 84 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 NSMCE1Q8WV22 266 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 FATE1Q969F0 183 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 TOE1Q96GM8 510 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 CEP41Q9BYV8 373 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 IRF2BPLQ9H1B7 796 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 NEUROG2Q9H2A3 272 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 RBM22Q9NW64 420 aaKnown RBP eCLIP12.93□□□□□ -0.343e-7■■■■■ 29.6
SS18-202ENST00000269138 R3HDM2Q9Y2K5 976 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 JRKLQ9Y4A0 524 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 GOLGA6L9A6NEM1 432 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 C1QTNF3-AMACRE9PGA6 284 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 PPP1R12AO14974 1030 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 RNASEH2AO75792 299 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 PIGNO95427 931 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 IGLV3-19P01714 112 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 ATP1A1P05023 1023 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 HLA-DQB2P05538 268 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 UGT2B4P06133 528 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 ACSL1P33121 698 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CNR2P34972 360 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CSNK1DP48730 415 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 RENBPP51606 427 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 NSUN2Q08J23 767 aaKnown RBP eCLIP12.93□□□□□ -0.34
SS18-202ENST00000269138 SIM2Q14190 667 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 NOMO1Q15155 1222 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 TTC31Q49AM3 519 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 SEL1L2Q5TEA6 688 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 FAM46CQ5VWP2 391 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 ZC3H14Q6PJT7 736 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 PRR23BQ6ZRT6 265 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CEP68Q76N32 757 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 BZW1Q7L1Q6 419 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 SLC13A5Q86YT5 568 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.93□□□□□ -0.34
SS18-202ENST00000269138 CNTD1Q8N815 330 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 TFB1MQ8WVM0 346 aaKnown RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 WDR24Q96S15 920 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 IL12RB2Q99665 862 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 OMDQ99983 421 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 MGME1Q9BQP7 344 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 BRD8Q9H0E9 1235 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 CARD9Q9H257 536 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 NOD2Q9HC29 1040 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 WSB2Q9NYS7 404 aaPredicted RBP12.93□□□□□ -0.34
SS18-202ENST00000269138 SEPT10Q9P0V9 454 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 SCML1Q9UN30 329 aa12.93□□□□□ -0.34
SS18-202ENST00000269138 EML5Q05BV3 1969 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 H7C0C1 242 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 MAP3K13O43283 966 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 CR2P20023 1033 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 CD6P30203 668 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 NBL1P41271 181 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 ATP5OP48047 213 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 EIF3EP60228 445 aaKnown RBP12.92□□□□□ -0.34
SS18-202ENST00000269138 GNG11P61952 73 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 IFI35P80217 286 aaPredicted RBP12.92□□□□□ -0.34
SS18-202ENST00000269138 NHLH1Q02575 133 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 ITKQ08881 620 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 BYSLQ13895 437 aaKnown RBP12.92□□□□□ -0.34
SS18-202ENST00000269138 IHHQ14623 411 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 PLK5Q496M5 336 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 GDPD4Q6W3E5 623 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 USP30Q70CQ3 517 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 CAMK1DQ8IU85 385 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 TMEFF1Q8IYR6 380 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 BBS5Q8N3I7 341 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 SPACA7Q96KW9 195 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms