RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 XRCC4Q13426 336 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 CAMK2GQ13555 558 aaPredicted RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 HNRNPDQ14103 355 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 RFTN1Q14699 578 aaPredicted RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 LBRQ14739 615 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 STARD3Q14849 445 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 PRKD1Q15139 912 aaPredicted RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 CARD16Q5EG05 197 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 C9orf64Q5T6V5 341 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TMCO4Q5TGY1 634 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 MARC1Q5VT66 337 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 MAMSTRQ6ZN01 415 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 METTL3Q86U44 580 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 ZSCAN30Q86W11 494 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 STK40Q8N2I9 435 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TEX26Q8N6G2 289 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 PCDH20Q8N6Y1 951 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 DTWD2Q8NBA8 298 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TTC13Q8NBP0 860 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TSEN2Q8NCE0 465 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 OR2A12Q8NGT7 310 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 NSMCE1Q8WV22 266 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 TFB1MQ8WVM0 346 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 MAML1Q92585 1016 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 FATE1Q969F0 183 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 ISG20Q96AZ6 181 aaKnown RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 CINPQ9BW66 212 aaPredicted RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 CEP44Q9C0F1 390 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 BRD8Q9H0E9 1235 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 SMARCAL1Q9NZC9 954 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 LHX3Q9UBR4 397 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 SAR1BQ9Y6B6 198 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 MYO15AQ9UKN7 3530 aa8.71□□□□□ -1.02
NUP88-211ENST00000575976 MUC22E2RYF6 1773 aaPredicted RBP8.71□□□□□ -1.02
NUP88-211ENST00000575976 TCRBV21S2A2A0A5A6 115 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 HACD1B0YJ81 288 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 K7ESF4 209 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 KCNK1O00180 336 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 MCF2LO15068 1137 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 MUSKO15146 869 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 LAMTOR5O43504 91 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 JCHAINP01591 159 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 CCNB1P14635 433 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 RBL1P28749 1068 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 GKP32189 559 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 NBL1P41271 181 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 MMP13P45452 471 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 RGRP47804 291 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 CCR3P51677 355 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 CCNHP51946 323 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 DGKEP52429 567 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 COPAP53621 1224 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 MAXP61244 160 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 ZNF33AQ06730 810 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 ZBTB17Q13105 803 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 SLC45A4Q5BKX6 768 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 ATXN7L2Q5T6C5 722 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 DARS2Q6PI48 645 aaKnown RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 TSSK4Q6SA08 328 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 DPY19L3Q6ZPD9 716 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 C1orf210Q8IVY1 113 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 PGBD5Q8N414 524 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 RYBPQ8N488 228 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 CHST14Q8NCH0 376 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 OR2AP1Q8NGE2 309 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 OR2T3Q8NH03 318 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 SLC35B2Q8TB61 432 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 ACTRT1Q8TDG2 376 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 MAIP1Q8WWC4 291 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 C1orf54Q8WWF1 131 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 ATG4AQ8WYN0 398 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 OR8D1Q8WZ84 308 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 NKD2Q969F2 451 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 ZNF419Q96HQ0 510 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 EXOC2Q96KP1 924 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 QKIQ96PU8 341 aaKnown RBP eCLIP8.7□□□□□ -1.02
NUP88-211ENST00000575976 PSKH2Q96QS6 385 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 HHIPQ96QV1 700 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 FAM129BQ96TA1 746 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 IL12RB2Q99665 862 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 CEP41Q9BYV8 373 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 SLC6A17Q9H1V8 727 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 POLMQ9NP87 494 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 NT5MQ9NPB1 228 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 RBM22Q9NW64 420 aaKnown RBP eCLIP8.7□□□□□ -1.02
NUP88-211ENST00000575976 SEPT10Q9P0V9 454 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 HECAQ9UBI9 543 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 SEPT3Q9UH03 358 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 EVLQ9UI08 416 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 DNPEPQ9ULA0 475 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 TTC7AQ9ULT0 858 aaPredicted RBP8.7□□□□□ -1.02
NUP88-211ENST00000575976 BAHCC1Q9P281 2608 aa8.7□□□□□ -1.02
NUP88-211ENST00000575976 NCOR2Q9Y618 2525 aa8.69□□□□□ -1.02
NUP88-211ENST00000575976 TTC24A2A3L6 582 aaPredicted RBP8.69□□□□□ -1.02
NUP88-211ENST00000575976 BCLAF3A2AJT9 711 aaKnown RBP8.69□□□□□ -1.02
NUP88-211ENST00000575976 RNF103O00237 685 aa8.69□□□□□ -1.02
NUP88-211ENST00000575976 PGRMC1O00264 195 aaKnown RBP8.69□□□□□ -1.02
NUP88-211ENST00000575976 INSIG1O15503 277 aa8.69□□□□□ -1.02
NUP88-211ENST00000575976 GALR2O43603 387 aaPredicted RBP8.69□□□□□ -1.02
NUP88-211ENST00000575976 LIASO43766 372 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms