RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MYO15AQ9UKN7 3530 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 TARSL2A2RTX5 802 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 KCNK1O00180 336 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 KCNK3O14649 394 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 NPC1O15118 1278 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 MID1O15344 667 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 HLA-DQB2P05538 268 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 C7P10643 843 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 BCKDHBP21953 392 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 PSMD8P48556 350 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 CLCN6P51797 869 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 CCNHP51946 323 aaPredicted RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 COPS2P61201 443 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 MAXP61244 160 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 OTUD4Q01804 1114 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 PPIDQ08752 370 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 ZBTB17Q13105 803 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 RPS6KA1Q15418 735 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 MAP7D1Q3KQU3 841 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 SDE2Q6IQ49 451 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 KIAA1324Q6UXG2 1013 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 ADAT2Q7Z6V5 191 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 ZC3H18Q86VM9 953 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 MMAAQ8IVH4 418 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 AADATQ8N5Z0 425 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 UBL4BQ8N7F7 174 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 CNTD1Q8N815 330 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 TRIM58Q8NG06 486 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 CCDC26Q8TAB7 109 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 GRIN3AQ8TCU5 1115 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 MAML1Q92585 1016 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 ARRDC3Q96B67 414 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 HDAC11Q96DB2 347 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 ALS2CR12Q96Q35 445 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 MAK16Q9BXY0 300 aaKnown RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 PRDM16Q9HAZ2 1276 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 POLMQ9NP87 494 aaPredicted RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 KCND1Q9NSA2 647 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 SUN2Q9UH99 717 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 EVLQ9UI08 416 aaPredicted RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 MBD1Q9UIS9 605 aaPredicted RBP9.95□□□□□ -0.82
CLK3-208ENST00000562626 FBXO4Q9UKT5 387 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 HPCAL4Q9UM19 191 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 R4GN57 208 aa9.95□□□□□ -0.82
CLK3-208ENST00000562626 PCDH15Q96QU1 1955 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ZSCAN5CA6NGD5 496 aaPredicted RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 MCF2LO15068 1137 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 AXIN1O15169 862 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 HRO43593 1189 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 SYNCRIPO60506 623 aaKnown RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 PIGNO95427 931 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 CR2P20023 1033 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 TGM2P21980 687 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 HOXA6P31267 233 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 CHRNA3P32297 505 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 DRD3P35462 400 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 SLC20A2Q08357 652 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 TFDP2Q14188 446 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 LBRQ14739 615 aaKnown RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 STARD3Q14849 445 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 PRKD1Q15139 912 aaPredicted RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 NOMO1Q15155 1222 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 INO80DQ53TQ3 878 aaPredicted RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 ODF2Q5BJF6 829 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 CARD16Q5EG05 197 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 TMCO4Q5TGY1 634 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 WDR5BQ86VZ2 330 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ZSWIM9Q86XI8 627 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 SLC13A5Q86YT5 568 aaPredicted RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 PGBD3Q8N328 593 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.94□□□□□ -0.82
CLK3-208ENST00000562626 CAMKK1Q8N5S9 505 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 TEX26Q8N6G2 289 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 PCDH20Q8N6Y1 951 aaKnown RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 ZBTB44Q8NCP5 570 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 OR2AP1Q8NGE2 309 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 COG1Q8WTW3 980 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ATG4AQ8WYN0 398 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ISG20Q96AZ6 181 aaKnown RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 MS4A14Q96JA4 679 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 TSGA13Q96PP4 275 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 CEP44Q9C0F1 390 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 BCCIPQ9P287 314 aaKnown RBP eCLIP9.94□□□□□ -0.82
CLK3-208ENST00000562626 HECAQ9UBI9 543 aaPredicted RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 PPM1HQ9ULR3 514 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 CYP8B1Q9UNU6 501 aa9.94□□□□□ -0.82
CLK3-208ENST00000562626 ZFC3H1O60293 1989 aaKnown RBP9.94□□□□□ -0.82
CLK3-208ENST00000562626 BAHCC1Q9P281 2608 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 CACNA1BQ00975 2339 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 CXorf51AA0A1B0GTR3 108 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 APOC4-APOC2K7ER74 178 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ZNF185O15231 689 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 SPINT1O43278 529 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 LILRB5O75023 590 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 LEFTY1O75610 366 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 GSRP00390 522 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 JCHAINP01591 159 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 APOC2P02655 101 aa9.93□□□□□ -0.82
CLK3-208ENST00000562626 ITIH2P19823 946 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms