RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 OR2T3Q8NH03 318 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 DENND1AQ8TEH3 1009 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ARL5BQ96KC2 179 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ASB16Q96NS5 453 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 FCRL3Q96P31 734 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 GFM1Q96RP9 751 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 AIFM2Q9BRQ8 373 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ZCWPW1Q9H0M4 648 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 COG4Q9H9E3 785 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 DNAJB4Q9UDY4 337 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ARHGAP26Q9UNA1 814 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 EDDM13A0A1B0GTR0 161 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ZSCAN5CA6NGD5 496 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 HNRNPRO43390 633 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 RGS20O76081 388 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 RHOCP08134 193 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 GLRA2P23416 452 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 ETV3P41162 512 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 GALK1P51570 392 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SF3A2Q15428 464 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 C6orf183Q5T699 404 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PHF19Q5T6S3 580 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 C1orf94Q6P1W5 598 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 KDELC1Q6UW63 502 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CAND1Q86VP6 1230 aaKnown RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 RASSF3Q86WH2 238 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 TMPRSS6Q8IU80 811 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 C17orf53Q8N3J3 647 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 PLD4Q96BZ4 506 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 CEP44Q9C0F1 390 aa8.25□□□□□ -1.09
LIMS1-203ENST00000393310 SCAND2PQ9GZW5 306 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 GPC6Q9Y625 555 aaPredicted RBP8.25□□□□□ -1.09
LIMS1-203ENST00000393310 EPOPA6NHQ4 379 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MOCS2O96007 188 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 ESRRAP11474 423 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DDIT3P35638 169 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 NPTX2P47972 431 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CLCN6P51797 869 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 GNA13Q14344 377 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 SLC9A5Q14940 896 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 NR0B2Q15466 257 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 NFIL3Q16649 462 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 INTS6LQ5JSJ4 861 aaKnown RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DEPDC1Q5TB30 811 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 TSSK4Q6SA08 328 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 GALNT7Q86SF2 657 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 LUZP2Q86TE4 346 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 GRAMD2AQ8IUY3 354 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 AHI1Q8N157 1196 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 GRIN3AQ8TCU5 1115 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 ZNF384Q8TF68 577 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 COG8Q96MW5 612 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CCDC177Q9NQR7 707 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PHPT1Q9NRX4 125 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 WARS2Q9UGM6 360 aaKnown RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PCDHGA1Q9Y5H4 931 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PSMD11O00231 422 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 KCNE1P15382 129 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CD9P21926 228 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 GDI2P50395 445 aaKnown RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 P3H1Q32P28 736 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MDH1BQ5I0G3 518 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DCUN1D2Q6PH85 259 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 ZNF280BQ86YH2 543 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CCDC13Q8IYE1 715 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 NAT16Q8N8M0 369 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DQX1Q8TE96 717 aaKnown RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 KCTD13Q8WZ19 329 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 HPS1Q92902 700 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 SCNM1Q9BWG6 230 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 WNT6Q9Y6F9 365 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 TK2O00142 265 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 IRAK2O43187 625 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CYP2A6P11509 494 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 FGFR3P22607 806 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PDHA2P29803 388 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PXNP49023 591 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 IST1P53990 364 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DLX2Q07687 328 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 FUT2Q10981 343 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 SLC8B1Q6J4K2 584 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MAMSTRQ6ZN01 415 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 FBXO39Q8N4B4 442 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 FAM98AQ8NCA5 519 aaKnown RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 RSAD2Q8WXG1 361 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 ASPSCR1Q9BZE9 553 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 V9GYQ6 96 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CYP3A7-CYP3A51PA0A087WV96 503 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MAGEB16A2A368 324 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MATN2O00339 956 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 DNALI1O14645 258 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 KATNA1O75449 491 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 PSMD10O75832 226 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 IGSF6O95976 241 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MT-ND3P03897 115 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 KLK3P07288 261 aaPredicted RBP8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CYP3A7P24462 503 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CASP14P31944 242 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 CLCNKBP51801 687 aa8.24□□□□□ -1.09
LIMS1-203ENST00000393310 MFAP3P55082 362 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms