RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SETMARQ53H47 684 aaPredicted RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 C6orf118Q5T5N4 469 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 NAPEPLDQ6IQ20 393 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 RETSATQ6NUM9 610 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 FBXL22Q6P050 247 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 OLFML1Q6UWY5 402 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.27□□□□□ -1.25
VPS41-208ENST00000448833 ZNF783Q6ZMS7 281 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 MMS22LQ6ZRQ5 1243 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 FAM183BPQ6ZVS7 135 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ARCQ7LC44 396 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 SLCO6A1Q86UG4 719 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ZSCAN30Q86W11 494 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 TMPRSS12Q86WS5 348 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ERICH1Q86X53 443 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PROSER1Q86XN7 944 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 ZNF677Q86XU0 584 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 FAM71AQ8IYT1 594 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 APCDD1Q8J025 514 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 STK40Q8N2I9 435 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 WDTC1Q8N5D0 677 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PNPLA1Q8N8W4 532 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 TMIEQ8NEW7 156 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 NT5C3BQ969T7 300 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PPP1R16AQ96I34 528 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 HAPLN3Q96S86 360 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 NPY6RQ99463 290 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 MUC3BQ9H195 1237 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 PREBQ9HCU5 417 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 EVA1BQ9NVM1 165 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 COX16Q9P0S2 106 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 CYTH4Q9UIA0 394 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 VANGL2Q9ULK5 521 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 HS3ST2Q9Y278 367 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 TRPM6Q9BX84 2022 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 MYLKQ15746 1914 aa7.27□□□□□ -1.25
VPS41-208ENST00000448833 SPEGQ15772 3267 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 TDRD6O60522 2096 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 PES1O00541 588 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 PLRG1O43660 514 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 PAGE1O75459 146 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 RHOCP08134 193 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ATXN1LP0C7T5 689 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 DESP17661 470 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 OR1E1P30953 314 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 CDH5P33151 784 aaPredicted RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 CTSOP43234 321 aaPredicted RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 GEMIN4P57678 1058 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 DEUP1Q05D60 604 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 SCAPQ12770 1279 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 RAPGEF1Q13905 1077 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 TAF5Q15542 800 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 DLG2Q15700 870 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 SMAD1Q15797 465 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 ARL13BQ3SXY8 428 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 CXorf57Q6NSI4 855 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 GJB7Q6PEY0 223 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 SLC47A2Q86VL8 602 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 TRIM69Q86WT6 500 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 DCP2Q8IU60 420 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 IRF2BP1Q8IU81 584 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 PASD1Q8IV76 773 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 SH2D3CQ8N5H7 860 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 AADATQ8N5Z0 425 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ATP11CQ8NB49 1132 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 PIP4K2CQ8TBX8 421 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 FRS2Q8WU20 508 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 FAM131CQ96AQ9 280 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ORAI3Q9BRQ5 295 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 STK33Q9BYT3 514 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 TKTL2Q9H0I9 626 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 SIK2Q9H0K1 926 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 MTG2Q9H4K7 406 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ACP6Q9NPH0 428 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ARHGEF38Q9NXL2 777 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 XPO7Q9UIA9 1087 aaKnown RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 PPM1HQ9ULR3 514 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 HS3ST4Q9Y661 456 aa7.26□□□□□ -1.25
VPS41-208ENST00000448833 ANKRD11Q6UB99 2663 aaPredicted RBP7.26□□□□□ -1.25
VPS41-208ENST00000448833 A0A1W2PR77 199 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 ILVBLA1L0T0 632 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 NEMP2A6NFY4 417 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 GOLGA8CPA6NN73 597 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 DRGXA6NNA5 263 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 C10orf142B7Z368 130 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 ENC1O14682 589 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 GRAP2O75791 330 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 ERBB2P04626 1255 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CAPNS1P04632 268 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 JUPP14923 745 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 UCHL3P15374 230 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CYP11B1P15538 503 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 DRD3P35462 400 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 STK19P49842 368 aaPredicted RBP7.25□□□□□ -1.25
VPS41-208ENST00000448833 SULT1E1P49888 294 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 NXPH1P58417 271 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 RNASE9P60153 205 aaKnown RBP7.25□□□□□ -1.25
VPS41-208ENST00000448833 E2F1Q01094 437 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 KCNJ12Q14500 433 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 DRAP1Q14919 205 aaPredicted RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms