RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NUMBP49757 651 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 FUT11Q495W5 492 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 AHI1Q8N157 1196 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 EZH1Q92800 747 aaPredicted RBP30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 FAF2Q96CS3 445 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 MFSD1Q9H3U5 465 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 KCND1Q9NSA2 647 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 KIAA1522Q9P206 1035 aaPredicted RBP30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 TBC1D3BA6NDS4 549 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 EGFP01133 1207 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 DRD1P21728 446 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 AMPD1P23109 780 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 PEX5P50542 639 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 RWDD2BP57060 319 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 ANKRD20A8PQ5CZ79 823 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 CCDC50Q8IVM0 306 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 EXD1Q8NHP7 514 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 RBM41Q96IZ5 413 aaKnown RBP30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 MUC3BQ9H195 1237 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 NUP205Q92621 2012 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 ATG2BQ96BY7 2078 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 DCLK1O15075 740 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 DDX3YO15523 660 aaKnown RBP30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 PDGFBP01127 241 aaPredicted RBP30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 MZF1P28698 734 aaPredicted RBP30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 OXCT1P55809 520 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 ZNF569Q5MCW4 686 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 MEI1Q5TIA1 1274 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 RNF219Q5W0B1 726 aaPredicted RBP30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 MFSD7Q6UXD7 560 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 VSIG1Q86XK7 387 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 PCDH19Q8TAB3 1148 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 WFIKKN2Q8TEU8 576 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 ETNK2Q9NVF9 386 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 MFHAS1Q9Y4C4 1052 aa30.4■■■□□ 2.46
LIMCH1-211ENST00000509638 NYNRINQ9P2P1 1898 aaKnown RBP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 TMEM221A6NGB7 291 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 ZNF487B1APH4 448 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 PRRT4C9JH25 899 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 M0R296 226 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 STK25O00506 426 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 ZRANB2O95218 330 aaKnown RBP eCLIP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 CCINQ13939 588 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 PLEKHG6Q3KR16 790 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 TMCO3Q6UWJ1 677 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 KIAA0907Q7Z7F0 614 aaPredicted RBP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 ZNF687Q8N1G0 1237 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 NPWQ8N729 165 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 DONSONQ9NYP3 566 aa30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 INTS6Q9UL03 887 aaKnown RBP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 MTF2Q9Y483 593 aaPredicted RBP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 MUC22E2RYF6 1773 aaPredicted RBP30.39■■■□□ 2.46
LIMCH1-211ENST00000509638 ILVBLA1L0T0 632 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 RAMP2O60895 175 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 CDKN2BP42772 138 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 SLC12A1Q13621 1099 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 PITRM1Q5JRX3 1037 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 TMEM215Q68D42 235 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 SPOCD1Q6ZMY3 1216 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 NUDT18Q6ZVK8 323 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 ADIPOR2Q86V24 386 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 APCDD1Q8J025 514 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 FLCNQ8NFG4 579 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 PJA1Q8NG27 643 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 CIPCQ9C0C6 399 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 VPS28Q9UK41 221 aa30.38■■■□□ 2.45
LIMCH1-211ENST00000509638 A0A0D9SEW6 157 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 GNA12Q03113 381 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 ZNF783Q6ZMS7 281 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 RCOR2Q8IZ40 523 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 SLC35F6Q8N357 371 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 RNF157Q96PX1 679 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 FEM1AQ9BSK4 669 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 NOL6Q9H6R4 1146 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 RBM12Q9NTZ6 932 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 ZKSCAN5Q9Y2L8 839 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 OR51B4Q9Y5P0 310 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 MYO18AQ92614 2054 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 K7EQS6 105 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 SEC13P55735 322 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 EIF4HQ15056 248 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 LLGL1Q15334 1064 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 RPS6KA1Q15418 735 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 DCAF12L1Q5VU92 463 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 MBLAC2Q68D91 279 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 CWF19L1Q69YN2 538 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 UMODL1-AS1Q8N2C9 162 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 PQLC3Q8N755 202 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 OR7D4Q8NG98 312 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 ALG14Q96F25 216 aa30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 CELF6Q96J87 481 aaKnown RBP30.37■■■□□ 2.45
LIMCH1-211ENST00000509638 ZDBF2Q9HCK1 2354 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 A0A0A0MRY4 1105 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 FAM170BA6NMN3 283 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 MSNP26038 577 aaKnown RBP30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 DMC1Q14565 340 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 TAZQ16635 292 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 TFDP3Q5H9I0 405 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 NCBP2-AS2Q69YL0 99 aa30.36■■■□□ 2.45
LIMCH1-211ENST00000509638 TRAF3IP1Q8TDR0 691 aaPredicted RBP30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms