RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 OTUD1Q5VV17 481 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-214ENST00000495485 NUGGCQ68CJ6 796 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 TIGD7Q6NT04 549 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-214ENST00000495485 GPR149Q86SP6 731 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 CCNJLQ8IV13 435 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 MCUQ8NE86 351 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 CPT1BQ92523 772 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 HDAC11Q96DB2 347 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 BTN2A3PQ96KV6 586 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 B3GALT6Q96L58 329 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 OLFM3Q96PB7 478 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 TTLL2Q9BWV7 592 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 ADAM33Q9BZ11 813 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 NACA2Q9H009 215 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 VPS37BQ9H9H4 285 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 XAB2Q9HCS7 855 aaKnown RBP10.54□□□□□ -0.72
HDAC3-214ENST00000495485 ETNK2Q9NVF9 386 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 CLEC1BQ9P126 229 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 MYO10Q9HD67 2058 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 DENND4CQ5VZ89 1909 aa10.54□□□□□ -0.72
HDAC3-214ENST00000495485 DENND4AQ7Z401 1863 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 GREB1Q4ZG55 1949 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 A0A0A0MRY4 1105 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ERI2A8K979 691 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 KCNU1A8MYU2 1149 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ZNF197O14709 1029 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CDH16O75309 829 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ACSL3O95573 720 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 MLNP12872 115 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EPCAMP16422 314 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 RPL17P18621 184 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 NR1D1P20393 614 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CCNCP24863 283 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CHKAP35790 457 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ATP5C1P36542 298 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 MAGEA6P43360 314 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EPHB3P54753 998 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 GDF10P55107 478 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 MLLT6P55198 1093 aaPredicted RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 GBE1Q04446 702 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 TAF10Q12962 218 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EIF4EBP2Q13542 120 aaPredicted RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 TERF2Q15554 542 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SMAD2Q15796 467 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ANO4Q32M45 955 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 PABPC1LQ4VXU2 614 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CCDC38Q502W7 563 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ANKRD20A2Q5SQ80 823 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ANKRD20A1Q5TYW2 823 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EMC10Q5UCC4 262 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ANKRD20A3Q5VUR7 823 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 RWDD4Q6NW29 188 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 KDM7AQ6ZMT4 941 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EP400NLQ6ZTU2 488 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SCD5Q86SK9 330 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 ZBED8Q8IZ13 594 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 GLIS1Q8NBF1 620 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 PPM1EQ8WY54 764 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SUSD6Q92537 303 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 FCRL2Q96LA5 508 aaPredicted RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SPATA13Q96N96 652 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 DDX50Q9BQ39 737 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 NAT9Q9BTE0 207 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SIK2Q9H0K1 926 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CYP4F11Q9HBI6 524 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 EIF2B3Q9NR50 452 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 NINJ2Q9NZG7 142 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 TRPM5Q9NZQ8 1165 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 MARCH2Q9P0N8 246 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 GMIPQ9P107 970 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 CALCOCO1Q9P1Z2 691 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 PPARGC1AQ9UBK2 798 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 FETUBQ9UGM5 382 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SFMBT1Q9UHJ3 866 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 SLC27A5Q9Y2P5 690 aa10.53□□□□□ -0.72
HDAC3-214ENST00000495485 HBS1LQ9Y450 684 aaKnown RBP10.53□□□□□ -0.72
HDAC3-214ENST00000495485 TRIOO75962 3097 aa10.52□□□□□ -0.72
HDAC3-214ENST00000495485 CCDC195A0A1B0GUA6 201 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 GRXCR2A6NFK2 248 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 WASH4PA8MWX3 477 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 E7ESA3 106 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 MFSD11O43934 449 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 PAGE1O75459 146 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 LRIG2O94898 1065 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 PTPN2P17706 415 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 HOXC13P31276 330 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 GBP2P32456 591 aaPredicted RBP10.52□□□□□ -0.73
HDAC3-214ENST00000495485 TUBP50607 506 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 PPIDQ08752 370 aaKnown RBP10.52□□□□□ -0.73
HDAC3-214ENST00000495485 GALNT2Q10471 571 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 EFEMP1Q12805 493 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 SLC10A2Q12908 348 aaPredicted RBP10.52□□□□□ -0.73
HDAC3-214ENST00000495485 KCNJ11Q14654 390 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 CBX2Q14781 532 aaPredicted RBP10.52□□□□□ -0.73
HDAC3-214ENST00000495485 PRKD1Q15139 912 aaPredicted RBP10.52□□□□□ -0.73
HDAC3-214ENST00000495485 BBS9Q3SYG4 887 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 TTMPQ5BVD1 217 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 TJAP1Q5JTD0 557 aa10.52□□□□□ -0.73
HDAC3-214ENST00000495485 LGSNQ5TDP6 509 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms