RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 HNRNPMP52272 730 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-214ENST00000637038 C1QTNF8P60827 252 aa5.21□□□□□ -1.58
SCN1A-214ENST00000637038 DEKP35659 375 aaKnown RBP5.2□□□□□ -1.58
SCN1A-214ENST00000637038 AFF2P51816 1311 aa5.2□□□□□ -1.58
SCN1A-214ENST00000637038 TXNDC2Q86VQ3 553 aa5.2□□□□□ -1.58
SCN1A-214ENST00000637038 GCC1Q96CN9 775 aa5.2□□□□□ -1.58
SCN1A-214ENST00000637038 SLAIN2Q9P270 581 aa5.2□□□□□ -1.58
SCN1A-214ENST00000637038 USP35Q9P2H5 1018 aa5.2□□□□□ -1.58
SCN1A-214ENST00000637038 NBR1Q14596 966 aa5.19□□□□□ -1.58
SCN1A-214ENST00000637038 C19orf44Q9H6X5 657 aa5.19□□□□□ -1.58
SCN1A-214ENST00000637038 KNSTRNQ9Y448 316 aa5.19□□□□□ -1.58
SCN1A-214ENST00000637038 TRMT2AQ8IZ69 625 aaKnown RBP5.19□□□□□ -1.58
SCN1A-214ENST00000637038 NEXMIFQ5QGS0 1516 aa5.19□□□□□ -1.58
SCN1A-214ENST00000637038 APLP1P51693 650 aa5.19□□□□□ -1.58
SCN1A-214ENST00000637038 NPM2Q86SE8 214 aaKnown RBP5.19□□□□□ -1.58
SCN1A-214ENST00000637038 PDE4CQ08493 712 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 NGEFQ8N5V2 710 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 SLC52A1Q9NWF4 448 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 RNF216Q9NWF9 866 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-214ENST00000637038 KDM2BQ8NHM5 1336 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 EIF3AQ14152 1382 aaKnown RBP5.18□□□□□ -1.58
SCN1A-214ENST00000637038 NRXN3Q9Y4C0 1643 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 SLC34A2O95436 690 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 NBPF1Q3BBV0 1214 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 GGT6Q6P531 493 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 HOMEZQ8IX15 550 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 SALL2Q9Y467 1007 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-214ENST00000637038 PLEKHH1Q9ULM0 1364 aa5.18□□□□□ -1.58
SCN1A-214ENST00000637038 COL3A1P02461 1466 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-214ENST00000637038 RGL3Q3MIN7 710 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 NPC1L1Q9UHC9 1359 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 TULP4Q9NRJ4 1543 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 TMEM131LA2VDJ0 1609 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 KIF20BQ96Q89 1820 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 PAK3O75914 559 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-214ENST00000637038 DLG5Q8TDM6 1919 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 USP21Q9UK80 565 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 MARF1Q9Y4F3 1742 aaKnown RBP5.17□□□□□ -1.58
SCN1A-214ENST00000637038 CDC42BPGQ6DT37 1551 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 PIK3C2GO75747 1445 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 PRELPP51888 382 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 PSME1Q06323 249 aa5.17□□□□□ -1.58
SCN1A-214ENST00000637038 HOXD11P31277 338 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-214ENST00000637038 PDE4AP27815 886 aa5.16□□□□□ -1.58
SCN1A-214ENST00000637038 CC2D1BQ5T0F9 858 aaKnown RBP5.16□□□□□ -1.58
SCN1A-214ENST00000637038 EXOC6Q8TAG9 804 aa5.16□□□□□ -1.58
SCN1A-214ENST00000637038 N4BP2Q86UW6 1770 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-214ENST00000637038 CD163L1Q9NR16 1453 aa5.16□□□□□ -1.58
SCN1A-214ENST00000637038 AHDC1Q5TGY3 1603 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-214ENST00000637038 CENPQQ7L2Z9 268 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-214ENST00000637038 PHLPP1O60346 1717 aa5.15□□□□□ -1.58
SCN1A-214ENST00000637038 AMER1Q5JTC6 1135 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-214ENST00000637038 C16orf71Q8IYS4 520 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-214ENST00000637038 PANK3Q9H999 370 aa5.15□□□□□ -1.58
SCN1A-214ENST00000637038 NRKQ7Z2Y5 1582 aa5.15□□□□□ -1.59
SCN1A-214ENST00000637038 AKAP12Q02952 1782 aa5.15□□□□□ -1.59
SCN1A-214ENST00000637038 CANXP27824 592 aaKnown RBP5.15□□□□□ -1.59
SCN1A-214ENST00000637038 POLD1P28340 1107 aa5.15□□□□□ -1.59
SCN1A-214ENST00000637038 TMEM94Q12767 1356 aa5.15□□□□□ -1.59
SCN1A-214ENST00000637038 DIP2AQ14689 1571 aa5.15□□□□□ -1.59
SCN1A-214ENST00000637038 SBNO2Q9Y2G9 1366 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 KNDC1Q76NI1 1749 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 NEFMP07197 916 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 FGD1P98174 961 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 GOLGA2Q08379 1002 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 TBX22Q9Y458 520 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 BCL11BQ9C0K0 894 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-214ENST00000637038 RGPD1P0DJD0 1748 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 TNS4Q8IZW8 715 aa5.14□□□□□ -1.59
SCN1A-214ENST00000637038 MON2Q7Z3U7 1717 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 NALCNQ8IZF0 1738 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 TOPAZ1Q8N9V7 1692 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 BACH2Q9BYV9 841 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 UPF2Q9HAU5 1272 aaKnown RBP5.13□□□□□ -1.59
SCN1A-214ENST00000637038 A0A0G2JS52 829 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 NPHP3Q7Z494 1330 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 CFAP65Q6ZU64 1925 aaKnown RBP5.13□□□□□ -1.59
SCN1A-214ENST00000637038 AAMPQ13685 434 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 BECN1Q14457 450 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 AIDAQ96BJ3 306 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 C8orf37Q96NL8 207 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 NOS1P29475 1434 aa5.13□□□□□ -1.59
SCN1A-214ENST00000637038 FAM196AQ6ZSG2 479 aa5.12□□□□□ -1.59
SCN1A-214ENST00000637038 CRBNQ96SW2 442 aa5.12□□□□□ -1.59
SCN1A-214ENST00000637038 RGS17Q9UGC6 210 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-214ENST00000637038 USP19O94966 1318 aa5.12□□□□□ -1.59
SCN1A-214ENST00000637038 KCNQ2O43526 872 aa5.12□□□□□ -1.59
SCN1A-214ENST00000637038 FAM161AQ3B820 660 aa5.12□□□□□ -1.59
SCN1A-214ENST00000637038 E9PSI1 815 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 CDCA7LQ96GN5 454 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 SPINK5Q9NQ38 1064 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-214ENST00000637038 USP54Q70EL1 1684 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 KRT27Q7Z3Y8 459 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 CFAP53Q96M91 514 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 DUSP27Q5VZP5 1158 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 STK32BQ9NY57 414 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 LAS1LQ9Y4W2 734 aaKnown RBP5.11□□□□□ -1.59
SCN1A-214ENST00000637038 CGNL1Q0VF96 1302 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 HSPA6P17066 643 aa5.11□□□□□ -1.59
SCN1A-214ENST00000637038 PPP2R1AP30153 589 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms