RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 TMCO3Q6UWJ1 677 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 CRACR2AQ9BSW2 395 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 CEP63Q96MT8 703 aa11.02□□□□□ -0.65
VPS13A-203ENST00000360280 PLIN1O60240 522 aa11.02□□□□□ -0.65
VPS13A-203ENST00000360280 TRIM21P19474 475 aaKnown RBP11.02□□□□□ -0.65
VPS13A-203ENST00000360280 FOXD1Q16676 465 aa11.02□□□□□ -0.65
VPS13A-203ENST00000360280 JAKMIP3Q5VZ66 844 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 MAP2K1Q02750 393 aaPredicted RBP11.01□□□□□ -0.65
VPS13A-203ENST00000360280 MIA2Q96PC5 1412 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 LRRFIP2Q9Y608 721 aaKnown RBP11.01□□□□□ -0.65
VPS13A-203ENST00000360280 USP47Q96K76 1375 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 CALCOCO1Q9P1Z2 691 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 ANKRD1Q15327 319 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 ERICH4A6NGS2 130 aa11.01□□□□□ -0.65
VPS13A-203ENST00000360280 WASHC2AQ641Q2 1341 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 FKBP5Q13451 457 aaPredicted RBP11□□□□□ -0.65
VPS13A-203ENST00000360280 TNMDQ9H2S6 317 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 MICALCLQ6ZW33 695 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 PDCL3Q9H2J4 239 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 LTV1Q96GA3 475 aaPredicted RBP11□□□□□ -0.65
VPS13A-203ENST00000360280 FAM193AP78312 1265 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 CCDC148Q8NFR7 591 aa11□□□□□ -0.65
VPS13A-203ENST00000360280 STK38Q15208 465 aa10.99□□□□□ -0.65
VPS13A-203ENST00000360280 CARMIL1Q5VZK9 1371 aa10.99□□□□□ -0.65
VPS13A-203ENST00000360280 IKQ13123 557 aaPredicted RBP10.99□□□□□ -0.65
VPS13A-203ENST00000360280 PDIA4P13667 645 aaKnown RBP10.99□□□□□ -0.65
VPS13A-203ENST00000360280 CUX1P39880 1505 aa10.99□□□□□ -0.65
VPS13A-203ENST00000360280 AEBP1Q8IUX7 1158 aa10.99□□□□□ -0.65
VPS13A-203ENST00000360280 SEPT11Q9NVA2 429 aaKnown RBP10.99□□□□□ -0.65
VPS13A-203ENST00000360280 CCDC27Q2M243 656 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 CFAP57Q96MR6 1250 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 LUZP1Q86V48 1076 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 CFAP45Q9UL16 551 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 ZNF397Q8NF99 534 aaPredicted RBP10.98□□□□□ -0.65
VPS13A-203ENST00000360280 ABCC8Q09428 1581 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 WASHC4Q2M389 1173 aa10.98□□□□□ -0.65
VPS13A-203ENST00000360280 ELL2O00472 640 aaPredicted RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 KRT85P78386 507 aa10.97□□□□□ -0.65
VPS13A-203ENST00000360280 TBC1D2BQ9UPU7 963 aa10.97□□□□□ -0.65
VPS13A-203ENST00000360280 CETN2P41208 172 aa10.97□□□□□ -0.65
VPS13A-203ENST00000360280 PRPF40AO75400 957 aaKnown RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 GCOM1H8Y6P7 765 aaPredicted RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 MYZAPP0CAP1 466 aa10.97□□□□□ -0.65
VPS13A-203ENST00000360280 WDR33Q9C0J8 1336 aaKnown RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 EIF2S2P20042 333 aaKnown RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 FAM177A1Q8N128 213 aaPredicted RBP10.97□□□□□ -0.65
VPS13A-203ENST00000360280 CCDC97Q96F63 343 aaPredicted RBP10.96□□□□□ -0.65
VPS13A-203ENST00000360280 ANKRD18BA2A2Z9 1011 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 LNPKQ9C0E8 428 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 ZSCAN12O43309 604 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 TRIM22Q8IYM9 498 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 DNAI2Q9GZS0 605 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 KIAA1328Q86T90 577 aa10.96□□□□□ -0.65
VPS13A-203ENST00000360280 PRKRIP1Q9H875 184 aaPredicted RBP10.96□□□□□ -0.66
VPS13A-203ENST00000360280 NEBLO76041 1014 aa10.96□□□□□ -0.66
VPS13A-203ENST00000360280 FIBPO43427 364 aa10.96□□□□□ -0.66
VPS13A-203ENST00000360280 ARHGAP29Q52LW3 1261 aa10.96□□□□□ -0.66
VPS13A-203ENST00000360280 IMMTQ16891 758 aaKnown RBP10.96□□□□□ -0.66
VPS13A-203ENST00000360280 RSPH4AQ5TD94 716 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 RRBP1Q9P2E9 1410 aaKnown RBP10.95□□□□□ -0.66
VPS13A-203ENST00000360280 SMC1AQ14683 1233 aaKnown RBP10.95□□□□□ -0.66
VPS13A-203ENST00000360280 TICAM2Q86XR7 235 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 TANGO6Q9C0B7 1094 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 EPB41L2O43491 1005 aaKnown RBP10.95□□□□□ -0.66
VPS13A-203ENST00000360280 UBXN4Q92575 508 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 TAF4BQ92750 862 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 EVA1CP58658 441 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 GNAI1P63096 354 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 CEP57L1Q8IYX8 460 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 ME1P48163 572 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 GIGYF2Q6Y7W6 1299 aaKnown RBP10.95□□□□□ -0.66
VPS13A-203ENST00000360280 SMTNL1A8MU46 457 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 NEUROD6Q96NK8 337 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 GRPEL1Q9HAV7 217 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 RUNDC1Q96C34 613 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 L3MBTL2Q969R5 705 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 FSD1Q9BTV5 496 aa10.95□□□□□ -0.66
VPS13A-203ENST00000360280 DDX23Q9BUQ8 820 aaKnown RBP10.95□□□□□ -0.66
VPS13A-203ENST00000360280 CDKL5O76039 1030 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 UBTFL1P0CB47 393 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 DHX37Q8IY37 1157 aaKnown RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 POTEJP0CG39 1038 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 SAMD1Q6SPF0 538 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 DIAPH1O60610 1272 aaKnown RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 PPP1R12BO60237 982 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 CGNQ9P2M7 1197 aaKnown RBP10.94□□□□□ -0.66
VPS13A-203ENST00000360280 MSH5O43196 834 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 PANK3Q9H999 370 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 SMARCA2P51531 1590 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 EFCAB2Q5VUJ9 269 aa10.94□□□□□ -0.66
VPS13A-203ENST00000360280 POLR3GO15318 223 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-203ENST00000360280 ERC1Q8IUD2 1116 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 ANAPC15P60006 121 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 NEK4P51957 841 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 RIPK4P57078 832 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 BCCIPQ9P287 314 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13A-203ENST00000360280 FYB1O15117 783 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 CYP46A1Q9Y6A2 500 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 WASHC2CQ9Y4E1 1318 aa10.93□□□□□ -0.66
VPS13A-203ENST00000360280 C6orf163Q5TEZ5 329 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms