RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 TSR1Q2NL82 804 aaKnown RBP16.54■□□□□ 0.24
VCP-201ENST00000358901 MARCH6O60337 910 aa16.54■□□□□ 0.24
VCP-201ENST00000358901 GRPEL1Q9HAV7 217 aa16.54■□□□□ 0.24
VCP-201ENST00000358901 ABCC5O15440 1437 aa16.53■□□□□ 0.24
VCP-201ENST00000358901 EVA1CP58658 441 aa16.53■□□□□ 0.24
VCP-201ENST00000358901 NLRP2Q9NX02 1062 aa16.53■□□□□ 0.24
VCP-201ENST00000358901 RARSP54136 660 aaKnown RBP16.53■□□□□ 0.24
VCP-201ENST00000358901 TPM1P09493 284 aa16.53■□□□□ 0.24
VCP-201ENST00000358901 SDF4Q9BRK5 362 aa16.53■□□□□ 0.24
VCP-201ENST00000358901 HDGFL1Q5TGJ6 251 aa16.52■□□□□ 0.24
VCP-201ENST00000358901 BCL11BQ9C0K0 894 aaPredicted RBP16.52■□□□□ 0.24
VCP-201ENST00000358901 THUMPD2Q9BTF0 503 aaKnown RBP16.52■□□□□ 0.24
VCP-201ENST00000358901 HMGXB3Q12766 1538 aa16.52■□□□□ 0.23
VCP-201ENST00000358901 MPNDQ8N594 471 aa16.52■□□□□ 0.23
VCP-201ENST00000358901 ABTB2Q8N961 1025 aa16.52■□□□□ 0.23
VCP-201ENST00000358901 NSD3Q9BZ95 1437 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 PSMA5P28066 241 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 CCDC173Q0VFZ6 552 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 WASHC4Q2M389 1173 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 ZNF771Q7L3S4 317 aaPredicted RBP16.51■□□□□ 0.23
VCP-201ENST00000358901 RALYLQ86SE5 291 aaKnown RBP16.51■□□□□ 0.23
VCP-201ENST00000358901 SSH1Q8WYL5 1049 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 NFXL1Q6ZNB6 911 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 SLC52A1Q9NWF4 448 aa16.51■□□□□ 0.23
VCP-201ENST00000358901 DUSP27Q5VZP5 1158 aa16.5■□□□□ 0.23
VCP-201ENST00000358901 CWC22Q9HCG8 908 aaKnown RBP16.5■□□□□ 0.23
VCP-201ENST00000358901 PLEKHH2Q8IVE3 1493 aa16.5■□□□□ 0.23
VCP-201ENST00000358901 FCHSD2O94868 740 aa16.5■□□□□ 0.23
VCP-201ENST00000358901 RRS1Q15050 365 aaKnown RBP16.5■□□□□ 0.23
VCP-201ENST00000358901 TSPY26PQ9H489 355 aa16.5■□□□□ 0.23
VCP-201ENST00000358901 MAP3K1Q13233 1512 aa16.5■□□□□ 0.23
VCP-201ENST00000358901 TRIM5Q9C035 493 aa16.49■□□□□ 0.23
VCP-201ENST00000358901 LRRCC1Q9C099 1032 aa16.49■□□□□ 0.23
VCP-201ENST00000358901 CIZ1Q9ULV3 898 aaPredicted RBP16.49■□□□□ 0.23
VCP-201ENST00000358901 PDCP20941 246 aa16.49■□□□□ 0.23
VCP-201ENST00000358901 A0A0U1RQG5 324 aaPredicted RBP16.49■□□□□ 0.23
VCP-201ENST00000358901 CCT4P50991 539 aaKnown RBP16.49■□□□□ 0.23
VCP-201ENST00000358901 PDE4CQ08493 712 aa16.49■□□□□ 0.23
VCP-201ENST00000358901 SYTL4Q96C24 671 aaPredicted RBP16.49■□□□□ 0.23
VCP-201ENST00000358901 ZNF428Q96B54 188 aa16.48■□□□□ 0.23
VCP-201ENST00000358901 TMX4Q9H1E5 349 aaPredicted RBP16.48■□□□□ 0.23
VCP-201ENST00000358901 RAPGEF3O95398 923 aa16.48■□□□□ 0.23
VCP-201ENST00000358901 SNAPC4Q5SXM2 1469 aa16.48■□□□□ 0.23
VCP-201ENST00000358901 RPRD2Q5VT52 1461 aaKnown RBP16.48■□□□□ 0.23
VCP-201ENST00000358901 ESPNB1AK53 854 aa16.47■□□□□ 0.23
VCP-201ENST00000358901 ABCA10Q8WWZ4 1543 aa16.47■□□□□ 0.23
VCP-201ENST00000358901 ARHGEF11O15085 1522 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 KIAA0586Q9BVV6 1533 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 NFE2L2Q16236 605 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 ZNF692Q9BU19 519 aaPredicted RBP16.46■□□□□ 0.23
VCP-201ENST00000358901 IFT140Q96RY7 1462 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 G3V3G9 751 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 DCAF8Q5TAQ9 597 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 VPS53Q5VIR6 699 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 DNAJC2Q99543 621 aaKnown RBP16.46■□□□□ 0.23
VCP-201ENST00000358901 IL1RAPL2Q9NP60 686 aa16.46■□□□□ 0.23
VCP-201ENST00000358901 PTPN23Q9H3S7 1636 aa16.45■□□□□ 0.22
VCP-201ENST00000358901 IPO7O95373 1038 aaKnown RBP16.45■□□□□ 0.22
VCP-201ENST00000358901 SRCIN1Q9C0H9 1055 aa16.45■□□□□ 0.22
VCP-201ENST00000358901 HOOK1Q9UJC3 728 aaKnown RBP16.45■□□□□ 0.22
VCP-201ENST00000358901 MAP4K4O95819 1239 aaPredicted RBP16.45■□□□□ 0.22
VCP-201ENST00000358901 RPAP2Q8IXW5 612 aaPredicted RBP16.45■□□□□ 0.22
VCP-201ENST00000358901 DNMBPQ6XZF7 1577 aa16.45■□□□□ 0.22
VCP-201ENST00000358901 SAFBQ15424 915 aaKnown RBP eCLIP16.45■□□□□ 0.22
VCP-201ENST00000358901 FMNL2Q96PY5 1086 aa16.45■□□□□ 0.22
VCP-201ENST00000358901 MRC2Q9UBG0 1479 aa16.45■□□□□ 0.22
VCP-201ENST00000358901 RBM10P98175 930 aaKnown RBP16.45■□□□□ 0.22
VCP-201ENST00000358901 ATAD2Q6PL18 1390 aa16.44■□□□□ 0.22
VCP-201ENST00000358901 LETM1O95202 739 aaPredicted RBP16.44■□□□□ 0.22
VCP-201ENST00000358901 EXOC6BQ9Y2D4 811 aa16.44■□□□□ 0.22
VCP-201ENST00000358901 CEBPZQ03701 1054 aaKnown RBP16.44■□□□□ 0.22
VCP-201ENST00000358901 GPS2Q13227 327 aa16.44■□□□□ 0.22
VCP-201ENST00000358901 ANKRD20A12PQ8NF67 263 aa16.44■□□□□ 0.22
VCP-201ENST00000358901 WDR33Q9C0J8 1336 aaKnown RBP16.44■□□□□ 0.22
VCP-201ENST00000358901 KINO60870 393 aaKnown RBP16.44■□□□□ 0.22
VCP-201ENST00000358901 TBC1D2Q9BYX2 928 aa16.44■□□□□ 0.22
VCP-201ENST00000358901 NKTRP30414 1462 aaKnown RBP16.43■□□□□ 0.22
VCP-201ENST00000358901 SPC24Q8NBT2 197 aa16.43■□□□□ 0.22
VCP-201ENST00000358901 CYP46A1Q9Y6A2 500 aa16.43■□□□□ 0.22
VCP-201ENST00000358901 RPGRIP1LQ68CZ1 1315 aa16.43■□□□□ 0.22
VCP-201ENST00000358901 LRPPRCP42704 1394 aaKnown RBP16.43■□□□□ 0.22
VCP-201ENST00000358901 TPM2P07951 284 aa16.43■□□□□ 0.22
VCP-201ENST00000358901 PLEKHO1Q53GL0 409 aaPredicted RBP16.43■□□□□ 0.22
VCP-201ENST00000358901 VPS37DQ86XT2 251 aa16.43■□□□□ 0.22
VCP-201ENST00000358901 PCMTD1Q96MG8 357 aaPredicted RBP16.43■□□□□ 0.22
VCP-201ENST00000358901 ERICH2A1L162 156 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 SRGAP3O43295 1099 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 MNS1Q8NEH6 495 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 MAP7D2Q96T17 732 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 RTEL1-TNFRSF6BF6WH68 1400 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 CAMSAP2Q08AD1 1489 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 PLB1Q6P1J6 1458 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 NAT10Q9H0A0 1025 aaKnown RBP16.42■□□□□ 0.22
VCP-201ENST00000358901 KDM4AO75164 1064 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 SIL1Q9H173 461 aa16.42■□□□□ 0.22
VCP-201ENST00000358901 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
VCP-201ENST00000358901 CCDC141Q6ZP82 1450 aa16.41■□□□□ 0.22
VCP-201ENST00000358901 HIP1O00291 1037 aa16.41■□□□□ 0.22
VCP-201ENST00000358901 STK3Q13188 491 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms