RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 BEST1O76090 585 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 RALBP11234 206 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 SPRP35270 261 aaPredicted RBP16.82■□□□□ 0.28
HOXD3-201ENST00000249440 CDK7P50613 346 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 AP2B1P63010 937 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 PPM1JQ5JR12 505 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 RABGAP1LQ5R372 815 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 LDLRAD1Q5T700 205 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 C1orf146Q5VVC0 180 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 SYPL2Q5VXT5 272 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 CES3Q6UWW8 571 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 CLPTM1LQ96KA5 538 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 SLC2A13Q96QE2 648 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 PIGVQ9NUD9 493 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 DNAJC28Q9NX36 388 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 IL1RAPL1Q9NZN1 696 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 BFARQ9NZS9 450 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 DNAJB4Q9UDY4 337 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 RAD54BQ9Y620 910 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 TSC2P49815 1807 aa16.82■□□□□ 0.28
HOXD3-201ENST00000249440 KCNK1O00180 336 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 CLDN5O00501 218 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 NCAM2O15394 837 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 PRKCGP05129 697 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 PTPN1P18031 435 aaKnown RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 NDUFV1P49821 464 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 HIC1Q14526 733 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 LBRQ14739 615 aaKnown RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 GPR142Q7Z601 462 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 OSTM1Q86WC4 334 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 OR52K1Q8NGK4 314 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 DNAJB3Q8WWF6 145 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SORT1Q99523 831 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SNX15Q9NRS6 342 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 ADAM28Q9UKQ2 775 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SIN3BO75182 1162 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 AP2A1O95782 977 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 F2P00734 622 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 CPA3P15088 417 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 ADRA1BP35368 520 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 CPOXP36551 454 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 ABCE1P61221 599 aaKnown RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SNX17Q15036 470 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 CLEC20AQ6ZU45 233 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 MYLK4Q86YV6 388 aaPredicted RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 APLFQ8IW19 511 aaPredicted RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 TMEM40Q8WWA1 233 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 ISL2Q96A47 359 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 FCRL3Q96P31 734 aaPredicted RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 AGAP3Q96P47 875 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 ZNF184Q99676 751 aaPredicted RBP16.81■□□□□ 0.28
HOXD3-201ENST00000249440 RBBP8Q99708 897 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 VCXQ9H320 206 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 VANGL2Q9ULK5 521 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 SLC45A1Q9Y2W3 748 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 WASF2Q9Y6W5 498 aa16.81■□□□□ 0.28
HOXD3-201ENST00000249440 DPPA5A6NC42 116 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 DYNC1LI2O43237 492 aaPredicted RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 C6orf222P0C671 652 aaPredicted RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ANPEPP15144 967 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ALOX15P16050 662 aaPredicted RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ERCC2P18074 760 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ACAT1P24752 427 aaKnown RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 PTPN3P26045 913 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 HARS2P49590 506 aaKnown RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 IDH3AP50213 366 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 SERPINB8P50452 374 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 TKTL1P51854 596 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 GRB14Q14449 540 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 TMEM154Q6P9G4 183 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 PAQR9Q6ZVX9 377 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 TMEM135Q86UB9 458 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 DCLK2Q8N568 766 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 DNAAF3Q8N9W5 541 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 NTAN1Q96AB6 310 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ZNF669Q96BR6 464 aaPredicted RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 MED10Q9BTT4 135 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 GPAMQ9HCL2 828 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 PNPOQ9NVS9 261 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ERI2A8K979 691 aaKnown RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 KIF3CO14782 793 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ADCY6O43306 1168 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 USP1O94782 785 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 MAGEA12P43365 314 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 COPAP53621 1224 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ITGA9Q13797 1035 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 SMAD1Q15797 465 aaKnown RBP16.8■□□□□ 0.28
HOXD3-201ENST00000249440 UBXN11Q5T124 520 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 STRA8Q7Z7C7 330 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 TP53INP2Q8IXH6 220 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 SLC7A14Q8TBB6 771 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 PPP1R13LQ8WUF5 828 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 KRT82Q9NSB4 513 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 ZNF236Q9UL36 1845 aa16.8■□□□□ 0.28
HOXD3-201ENST00000249440 A0A088AWK7 358 aa16.79■□□□□ 0.28
HOXD3-201ENST00000249440 FKBP6O75344 327 aa16.79■□□□□ 0.28
HOXD3-201ENST00000249440 FBXO21O94952 628 aa16.79■□□□□ 0.28
HOXD3-201ENST00000249440 FAM163BP0C2L3 166 aa16.79■□□□□ 0.28
HOXD3-201ENST00000249440 LINGO3P0C6S8 592 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms