RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KNL1Q8NG31 2342 aa11.06□□□□□ -0.64
CD44-227ENST00000528086 DOCK9Q9BZ29 2069 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 CHD5Q8TDI0 1954 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 IGHV1OR15-9A0A0B4J2B8 117 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 PES1O00541 588 aaKnown RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 SART1O43290 800 aaKnown RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 LRP3O75074 770 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 DAB1O75553 588 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 GJB6O95452 261 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 MOCS2O96007 188 aaPredicted RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 ZNF806P0C7X5 589 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 PABPC1P11940 636 aaKnown RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 SOX5P35711 763 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 FLT3P36888 993 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 GGCXP38435 758 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 CTSOP43234 321 aaPredicted RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 ID4P47928 161 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 MPP7Q5T2T1 576 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 NAA35Q5VZE5 725 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 E4F1Q66K89 784 aaPredicted RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 RAP1GAP2Q684P5 730 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 CAVIN1Q6NZI2 390 aaKnown RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 CHST9Q7L1S5 443 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 CIR1Q86X95 450 aaPredicted RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 SLC41A1Q8IVJ1 513 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 UNC45BQ8IWX7 931 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 DEFB119Q8N690 84 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 FIBINQ8TAL6 211 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 CPA5Q8WXQ8 436 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 IGSF8Q969P0 613 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 ALG14Q96F25 216 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 NAP1L5Q96NT1 182 aaPredicted RBP11.05□□□□□ -0.64
CD44-227ENST00000528086 ERGIC2Q96RQ1 377 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 MAGEB5Q9BZ81 275 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 PIGVQ9NUD9 493 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 STIM2Q9P246 746 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 GGA2Q9UJY4 613 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 RAB23Q9ULC3 237 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 USP18Q9UMW8 372 aa11.05□□□□□ -0.64
CD44-227ENST00000528086 SPEGQ15772 3267 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 HSF2BPO75031 334 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 ADCY5O95622 1261 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CYBBP04839 570 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 UNGP13051 313 aaPredicted RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 TACR2P21452 398 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 KRT9P35527 623 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 MPLP40238 635 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 SLC11A2P49281 568 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 NUMBP49757 651 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CDR2Q01850 454 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CENPCQ03188 943 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CAMK2GQ13555 558 aaPredicted RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 PREPLQ4J6C6 727 aaPredicted RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 USP39Q53GS9 565 aaKnown RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 EFHC1Q5JVL4 640 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 MBLAC2Q68D91 279 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CXorf57Q6NSI4 855 aaKnown RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 FBXL22Q6P050 247 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 TMEFF1Q8IYR6 380 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 APCDD1Q8J025 514 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 LGI2Q8N0V4 545 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 HJURPQ8NCD3 748 aaPredicted RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 SLC30A5Q8TAD4 765 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 BAP1Q92560 729 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 TTC17Q96AE7 1141 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 CIPCQ9C0C6 399 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 POLMQ9NP87 494 aaPredicted RBP11.04□□□□□ -0.64
CD44-227ENST00000528086 DDIT4Q9NX09 232 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 PCDHGA5Q9Y5G8 931 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 HS3ST4Q9Y661 456 aa11.04□□□□□ -0.64
CD44-227ENST00000528086 SYNJ2BP-COX16A0A087WUM0 186 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 TCRBV5S1A1TA0A578 114 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 MED19A0JLT2 244 aaPredicted RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 C10orf142B7Z368 130 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 GOLGA6L22H0YM25 854 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 LUC7L3O95232 432 aaKnown RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 MMP8P22894 467 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 MZF1P28698 734 aaPredicted RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 NOS2P35228 1153 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 CSKP41240 450 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 MATKP42679 507 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 CXCR3P49682 368 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 BPIFB4P59827 614 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 ZNF445P59923 1031 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 EIF4HQ15056 248 aaKnown RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 C5orf22Q49AR2 442 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 SH3PXD2AQ5TCZ1 1133 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 ARMCX6Q7L4S7 300 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 TRMT11Q7Z4G4 463 aaKnown RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 IRF2BP2Q7Z5L9 587 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 PHLDB2Q86SQ0 1253 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 TMEM35BQ8NCS4 154 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 JOSD2Q8TAC2 188 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 C18orf8Q96DM3 657 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 PGAP3Q96FM1 320 aaPredicted RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 BTN2A3PQ96KV6 586 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 TBCBQ99426 244 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 BPIFA3Q9BQP9 254 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms