RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 KLC4Q9NSK0 619 aa16.06■□□□□ 0.16
CCDC40-202ENST00000374876 HAUS2Q9NVX0 235 aa16.06■□□□□ 0.16
CCDC40-202ENST00000374876 GPATCH2LQ9NWQ4 482 aa16.06■□□□□ 0.16
CCDC40-202ENST00000374876 HEY1Q9Y5J3 304 aa16.06■□□□□ 0.16
CCDC40-202ENST00000374876 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-202ENST00000374876 PRUNE2Q8WUY3 3088 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 PAPSS1O43252 624 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 LILRB3O75022 631 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 TSHRP16473 764 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 TGM2P21980 687 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 FGFR3P22607 806 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 RPA3P35244 121 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 NRIP1P48552 1158 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 TAF6P49848 677 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 ELAVL2Q12926 359 aaKnown RBP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 EFTUD2Q15029 972 aaKnown RBP eCLIP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 DENND1AQ8TEH3 1009 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 STK32AQ8WU08 396 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 SUSD3Q96L08 255 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 SENP8Q96LD8 212 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 PAFAH2Q99487 392 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 WDR83Q9BRX9 315 aaKnown RBP16.05■□□□□ 0.16
CCDC40-202ENST00000374876 ADAM33Q9BZ11 813 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 TLE6Q9H808 572 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 PCDH18Q9HCL0 1135 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 NME7Q9Y5B8 376 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 VWA8A3KMH1 1905 aa16.05■□□□□ 0.16
CCDC40-202ENST00000374876 A0A1W2PPM1 405 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KPNA7A9QM74 516 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KCNN4O15554 427 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KRT4P19013 534 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 IL4RP24394 825 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 MSH2P43246 934 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 XRCC4Q13426 336 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 SOWAHAQ2M3V2 549 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 ARHGAP17Q68EM7 881 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 PDE12Q6L8Q7 609 aaKnown RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 GBP7Q8N8V2 638 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 FAF2Q96CS3 445 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 SNRNP25Q9BV90 132 aaKnown RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 B3GNT5Q9BYG0 378 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 DPEP3Q9H4B8 488 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 PAK5Q9P286 719 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 STK39Q9UEW8 545 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 CHMP2BQ9UQN3 213 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 M0QZQ0 153 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 MDM4O15151 490 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 CHADO15335 359 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 CNPP09543 421 aaKnown RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 HYAL1Q12794 435 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KCNJ11Q14654 390 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 PPP6R3Q5H9R7 873 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 ADGRD1Q6QNK2 874 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 FAM47EQ6ZV65 393 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 SUGP1Q8IWZ8 645 aaKnown RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 FUKQ8N0W3 1084 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 MAFAQ8NHW3 353 aaPredicted RBP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC40-202ENST00000374876 LPIN3Q9BQK8 851 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 RAB6BQ9NRW1 208 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 KLHL14Q9P2G3 628 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 PRKAG3Q9UGI9 489 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 GGT7Q9UJ14 662 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 IRAK3Q9Y616 596 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 XIRP2A4UGR9 3374 aa16.04■□□□□ 0.16
CCDC40-202ENST00000374876 CFAP69A5D8W1 941 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 TYROBPO43914 113 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 UBOX5O94941 541 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 ZBED1O96006 694 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 PDGFRBP09619 1106 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 ADORA2BP29275 332 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 ELK3P41970 407 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 HDAC4P56524 1084 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 BST2Q10589 180 aaKnown RBP16.03■□□□□ 0.16
CCDC40-202ENST00000374876 SKIV2LQ15477 1246 aaKnown RBP16.03■□□□□ 0.16
CCDC40-202ENST00000374876 HHATQ5VTY9 493 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 VSIG1Q86XK7 387 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 PQLC3Q8N755 202 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 PCDH19Q8TAB3 1148 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 KLHL5Q96PQ7 755 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 CYTH2Q99418 400 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 ZNF670Q9BS34 389 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 DHRS4Q9BTZ2 278 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 DNAI2Q9GZS0 605 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 USP29Q9HBJ7 922 aa16.03■□□□□ 0.16
CCDC40-202ENST00000374876 SSU72Q9NP77 194 aaKnown RBP16.03■□□□□ 0.16
CCDC40-202ENST00000374876 CYB561D2O14569 222 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 TEX28O15482 410 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 LINC01565O15544 149 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 PIAS1O75925 651 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 CCDC130P13994 396 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 GNL1P36915 607 aaPredicted RBP16.02■□□□□ 0.16
CCDC40-202ENST00000374876 BCAT1P54687 386 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 DNAJC3Q13217 504 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 PSMD5Q16401 504 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 PDK4Q16654 411 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 CA9Q16790 459 aa16.02■□□□□ 0.16
CCDC40-202ENST00000374876 SV2CQ496J9 727 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms